GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001508-TA|BGIBMGA001508-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (329 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.25 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   7.1  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   7.1  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   7.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 199 PAGPLWNTNSNRLNAR-DGVYV--EAIHTDGSTTGLGI 233
           P G LWN N+ RL  + D  Y   E I  +G  +GL I
Sbjct: 825 PIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSI 862


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 100 NNPTVV-IAHGWLSNQNTDINPTIRDAYLGKSDVNVIVLD 138
           N PT   IA+G L  +  + N  + D   G  DV+++ +D
Sbjct: 2   NEPTAAAIAYG-LDKKGAEQNILVYDLGGGTFDVSILTID 40


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 118 INPTIRDAYLGKSDVNVIVL 137
           ++  ++DA +GKS V+ IVL
Sbjct: 145 VDKVLQDAKIGKSAVHEIVL 164


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 118 INPTIRDAYLGKSDVNVIVL 137
           ++  ++DA +GKS V+ IVL
Sbjct: 145 VDKVLQDAKIGKSAVHEIVL 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,185
Number of Sequences: 317
Number of extensions: 3673
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 329
length of database: 114,650
effective HSP length: 57
effective length of query: 272
effective length of database: 96,581
effective search space: 26270032
effective search space used: 26270032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)