GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001508-TA|BGIBMGA001508-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family prote...    29   3.3  
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa...    29   4.3  
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    29   4.3  
At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    28   9.9  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    28   9.9  

>At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275, hydroxymuconic
           semialdehyde hydrolase, Pseudomonas stutzeri, AF039534;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 498

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 255 LSLCNHNRAWELFASTVTRNHLVGN 279
           L +C H+R W+  A  +TRN+   N
Sbjct: 370 LLICKHHRVWQFIAGVLTRNNRTVN 394


>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 251 PGCTLSLCNHNRAWELFASTVTRNHLVGNQCSNMLQVSSNSC 292
           P C+ S+C+ ++ WE F   +    +     + M+Q+  N C
Sbjct: 239 PLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDC 280


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 196 RLDPAGPLWNTNSNRLNARDGVYVEAIHTDGSTTG--LGIGSAVANADFFPNGGNSQPGC 253
           R D +GP WN   +  N R    + ++ +D +  G   G GS ++   F    GN+  G 
Sbjct: 325 RSDSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLSF---AGNTN-GF 380

Query: 254 TLSLCNHNRAWELFASTVTRNHLVGNQCSNMLQVSSNSCRGNRLNMGND 302
             S+    R   +++ +  +  +  +Q SN L   S S      N+G+D
Sbjct: 381 DGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSD 429


>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 263 AWELFASTVTRNHLVGNQ-CSNMLQVSSNSCRGNRLNMGNDDLRKSGQIRTLQSEHRPEI 321
           AW+LF  TV  N L  +Q    + +V +++CRG  L +       SG+ RT++ E R  I
Sbjct: 306 AWDLFQETVGENTLRSHQDIPKLARVVASTCRGLPLALNLIGEAMSGK-RTVR-EWRYTI 363

Query: 322 SLLS 325
            +L+
Sbjct: 364 HVLA 367


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 277 VGNQCSNMLQVSSNSCRGNRLNMGNDDLRK 306
           +GN C N+L+V    CRG     G D LRK
Sbjct: 441 LGNGCPNLLKVKVKKCRG-VTTQGADLLRK 469


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,214,182
Number of Sequences: 28952
Number of extensions: 357437
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 5
length of query: 329
length of database: 12,070,560
effective HSP length: 81
effective length of query: 248
effective length of database: 9,725,448
effective search space: 2411911104
effective search space used: 2411911104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)