GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001507-TA|BGIBMGA001507-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (342 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 214 GLDPAGPLWNRNSGRIAP 231
           G  P G LWN N+ R+ P
Sbjct: 822 GEKPIGILWNINNKRLEP 839


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 57  EAKPNMQLLNEVERNPANNIYLLYTRRNPTSPQTLVMNNANSITSSNFNRNVPTVVVA 114
           E K  +  ++  E   A N+ L     +   P   +   A S+   + NR+ PT   A
Sbjct: 201 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATA 258


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 57  EAKPNMQLLNEVERNPANNIYLLYTRRNPTSPQTLVMNNANSITSSNFNRNVPTVVVA 114
           E K  +  ++  E   A N+ L     +   P   +   A S+   + NR+ PT   A
Sbjct: 149 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATA 206


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 57  EAKPNMQLLNEVERNPANNIYLLYTRRNPTSPQTLVMNNANSITSSNFNRNVPTVVVA 114
           E K  +  ++  E   A N+ L     +   P   +   A S+   + NR+ PT   A
Sbjct: 332 EKKIGLSKISPKESQDAANVKLSPKSASSLPPGNNIHGMAPSVMYPHLNRSSPTTATA 389


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,276
Number of Sequences: 317
Number of extensions: 3660
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 114,650
effective HSP length: 57
effective length of query: 285
effective length of database: 96,581
effective search space: 27525585
effective search space used: 27525585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)