GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001507-TA|BGIBMGA001507-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0211 - 15656614-15657186                                         30   2.3  
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139...    30   3.1  
11_03_0090 - 9797967-9798814,9798931-9799312                           29   7.1  
07_01_1115 - 10297763-10298103,10298396-10298441,10299077-102991...    29   7.1  
07_01_0159 - 1116786-1117153,1117251-1119936                           29   7.1  
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    29   7.1  
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   9.4  

>09_04_0211 - 15656614-15657186
          Length = 190

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 188 LIGFSLGAHLVANAGRELRGRVARVTGLDPAGPLWNRNSGRIAPT 232
           ++  S+G  LVA AGRE R   A  +G + A    +R SG+ AP+
Sbjct: 128 ILSSSVGRELVAAAGREERPVGAHHSGREGACHRHHRRSGKSAPS 172


>02_04_0086 +
           19610899-19610992,19613399-19613652,19613744-19613955,
           19614059-19614320,19614432-19614728
          Length = 372

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 187 HLIGFSLGAHLVANAGRELRGRVARVTGLDPAGPLWNRNSGRIAPTDGVYVE 238
           +LIG+S+G  ++ +  + +  R+A V+ L P G  W         T+  YV+
Sbjct: 166 YLIGYSMGGEIMWSCLKNIPHRLAGVSILGPVGNYWWSGYPSNVSTEAWYVQ 217


>11_03_0090 - 9797967-9798814,9798931-9799312
          Length = 409

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 114 AHGWLSNQKTKLNGVLRDVYLKKSNVNVIILDWRRLAISDYVTAVRGVPAVGRGLGQFLD 173
           A GW ++   KL  +LRD++L ++ +  ++L    ++    +     +   G G    LD
Sbjct: 126 AAGWFNS---KLASILRDIFLMENQIPWLVLQ-TLMSFKPALDVEDFIARAGLGFEARLD 181

Query: 174 FVNR--ITGAPFNSMHLIG 190
            V R  +    +   HL+G
Sbjct: 182 LVKRPLVLNGSYTPAHLLG 200


>07_01_1115 -
           10297763-10298103,10298396-10298441,10299077-10299101,
           10299663-10299718,10299818-10299925
          Length = 191

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 266 GGVSQPGCLLNVCNHNRAWEYF-SATVSYNHLVGNQCDNTNQISSNNCRGRQ 316
           G  +   C+     H+  W+ F S  +  N+L     D TN + S+N  G++
Sbjct: 11  GRSATEACIFQEYGHHADWDKFLSKQIEPNNLAIRLTDQTNTVRSSNGNGKR 62


>07_01_0159 - 1116786-1117153,1117251-1119936
          Length = 1017

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 165 GRGLGQFLDFVNRITGAPFNSMHLIGFSLGAHLVANAGRELRGRVARVTGLDPAG 219
           G  L   LDF   IT  PF +M    ++   HL    G     R  RV  LD  G
Sbjct: 36  GTDLASLLDFKRAITNDPFGAMS--SWNTNTHLCRWKGVTCDQRAHRVVALDLVG 88


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 187 HLIGFSLGAHLVANAGRELRGRVARVTGLDPAGPLW 222
           +L+GFS+G  ++ +  + +  R+A V  L P G  W
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYW 169


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 187 HLIGFSLGAHLVANAGRELRGRVARVTGLDPAGPLW 222
           +L+GFS+G  ++ +  + +  R+A V  L P G  W
Sbjct: 167 YLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,113
Number of Sequences: 37544
Number of extensions: 425439
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 7
length of query: 342
length of database: 14,793,348
effective HSP length: 83
effective length of query: 259
effective length of database: 11,677,196
effective search space: 3024393764
effective search space used: 3024393764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)