GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001507-TA|BGIBMGA001507-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (342 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical...    28   8.4  
AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute (pl...    28   8.4  
AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute (pl...    28   8.4  

>U40953-4|AAB52649.2|  421|Caenorhabditis elegans Hypothetical
           protein F53B1.6 protein.
          Length = 421

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 109 PTVVVAHGWLSNQKTKLN-GVLRDVYLKKSNVNVIILDWRRLAISDYVTAVRGVPAVG 165
           P  +  HGW S+Q+TK N   L +      + NV+++  R     D    VRGV   G
Sbjct: 299 PDALHYHGWYSHQRTKFNLTALFENDTMNLSENVMLVKCRGHTSDDIGVVVRGVKRRG 356


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 47  GDGILQNVDLEAKPNMQLLNEVERNPANNIYLLYTRRNPTSPQTLVMNNANSITSSNFNR 106
           GDG    +   A P + +L EV+   +     L + +N   P   V +     T SN   
Sbjct: 280 GDGANVAIKFGANPKIGILQEVKTKFSPRSAFLKSPKNAVYPNFTVSHEKEVATCSNSTT 339

Query: 107 NVPTVVVAHGW--LSNQKTKLNGVL 129
                +  +G+  LS Q T LNG L
Sbjct: 340 FEVKQISGNGFMPLSFQWTILNGTL 364


>AC006772-1|AAF60610.3|  326|Caenorhabditis elegans Hypothetical
          protein Y46D2A.2 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 30 PVPQEEAKYSRYIQFPDGDGILQNVDLEAKPNMQLLNEVERNPAN 74
          P+P  E     Y+   D +G+L+N+ ++       L+++  N AN
Sbjct: 31 PIPNVEEGAKLYLASNDDNGLLKNIQVQTAGGSFTLDQINVNTAN 75


>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 279 NHNRAWEYFSATVSYNHLVGNQ 300
           NHN +W YFS TV+ NH + N+
Sbjct: 354 NHN-SW-YFSTTVNVNHFISNE 373


>Z81497-3|CAB04081.2|  593|Caenorhabditis elegans Hypothetical
           protein F10C2.6 protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 73  ANNIYLLYTRRN-PTSPQTLVMNNANSITSSNFNRNVPTVVVAHGWLSNQKTKLNGVLRD 131
           A N+  +  RR   TS  T+  +  + +++SN N  V  +    GWLS+++     VLRD
Sbjct: 4   ARNVTAICCRRILSTSSYTVRTHICDELSTSNKNEKVSVM----GWLSHKRMDRFFVLRD 59

Query: 132 VY 133
            Y
Sbjct: 60  AY 61


>AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical
           protein F39E9.1 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 30  PVPQEEAKYSRYIQFPDGDGILQNVDLEAKPNMQLLNEVERNPAN 74
           P+P  E     Y+   D +G+L+N+ ++       L+++  N AN
Sbjct: 135 PIPNVEEGAKLYLASNDDNGLLKNIQVQTAGGSFTLDQLNVNTAN 179


>AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform b protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 312 CRGRQFHMGNDDLRKFGTGLYRVNTGRSYP 341
           C  +Q H+  +DLR F T L R++T    P
Sbjct: 485 CFAQQSHVKENDLRMFTTQLQRISTDAGMP 514


>AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform a protein.
          Length = 910

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 312 CRGRQFHMGNDDLRKFGTGLYRVNTGRSYP 341
           C  +Q H+  +DLR F T L R++T    P
Sbjct: 504 CFAQQSHVKENDLRMFTTQLQRISTDAGMP 533


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,469,160
Number of Sequences: 27539
Number of extensions: 359108
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 8
length of query: 342
length of database: 12,573,161
effective HSP length: 82
effective length of query: 260
effective length of database: 10,314,963
effective search space: 2681890380
effective search space used: 2681890380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)