GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001507-TA|BGIBMGA001507-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    33   0.28 
At5g15860.2 68418.m01856 expressed protein                             31   0.84 
At5g15860.1 68418.m01855 expressed protein                             31   0.84 
At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family prote...    28   7.9  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 2   RSPLAFLLIVAVTKVTSHVGIVTVASAVPVPQEEAKYSRYIQFPD-GDGILQNVDLEAKP 60
           R  L+FLL       TS V +  ++  VP  QE +        PD  + I Q+ +LE KP
Sbjct: 345 RRSLSFLLPSVEDDQTSLVDVQVLSCLVPPKQEHSCAHNGDDLPDIQERIGQHSNLETKP 404

Query: 61  NMQLLNEVERNPANNIYLLYTRRNP 85
           +  LL+  E+ P  ++ +L     P
Sbjct: 405 DSYLLHVDEQIPLVDVQVLSYLETP 429


>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 21/125 (16%)

Query: 94  NNANSITSSNFNRNVPTVVVAHG--WLSNQKTKLNGVLRDVYLKKSNVNVIILDWRRL-- 149
           N  +    SN +   P VV   G  W+   K    G L  + L + ++ V  LD+R    
Sbjct: 141 NRLDLYLPSNNDGLKPVVVFVTGGAWIIGYKAW--GSLLGMQLAERDIIVACLDYRNFPQ 198

Query: 150 -AISDYVT-AVRGVPAVGRGLGQFLDFVNRITGAPFNSMHLIGFSLGAHLVA-----NAG 202
             ISD VT A +G+  V   +  F        G   N ++L+G S GAH+ A      A 
Sbjct: 199 GTISDMVTDASQGISFVCNNISAF--------GGDPNRIYLMGQSAGAHIAACALLEQAT 250

Query: 203 RELRG 207
           +EL+G
Sbjct: 251 KELKG 255


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 21/125 (16%)

Query: 94  NNANSITSSNFNRNVPTVVVAHG--WLSNQKTKLNGVLRDVYLKKSNVNVIILDWRRL-- 149
           N  +    SN +   P VV   G  W+   K    G L  + L + ++ V  LD+R    
Sbjct: 141 NRLDLYLPSNNDGLKPVVVFVTGGAWIIGYKAW--GSLLGMQLAERDIIVACLDYRNFPQ 198

Query: 150 -AISDYVT-AVRGVPAVGRGLGQFLDFVNRITGAPFNSMHLIGFSLGAHLVA-----NAG 202
             ISD VT A +G+  V   +  F        G   N ++L+G S GAH+ A      A 
Sbjct: 199 GTISDMVTDASQGISFVCNNISAF--------GGDPNRIYLMGQSAGAHIAACALLEQAT 250

Query: 203 RELRG 207
           +EL+G
Sbjct: 251 KELKG 255


>At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family protein
           low similarity to
           2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
           [Pseudomonas putida] GI:2822275, hydroxymuconic
           semialdehyde hydrolase, Pseudomonas stutzeri, AF039534;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 498

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 268 VSQPGCLLNVCNHNRAWEYFSATVSYNHLVGN 299
           +S+  CLL +C H+R W++ +  ++ N+   N
Sbjct: 364 ISRTICLL-ICKHHRVWQFIAGVLTRNNRTVN 394


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,114,243
Number of Sequences: 28952
Number of extensions: 339478
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 12,070,560
effective HSP length: 82
effective length of query: 260
effective length of database: 9,696,496
effective search space: 2521088960
effective search space used: 2521088960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)