Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001506-TA|BGIBMGA001506-PA|IPR013818|Lipase, N-terminal,
IPR000734|Lipase, IPR002035|von Willebrand factor, type A
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    30   0.45 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    29   1.0  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   9.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.7  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 6   LQRGEYPRYMDIPDDEGNLHKVDLEAEPDYDLLDKVNRNNANQYFLFTR 54
           + R  +P    +P D+  +H + L    D + L+++N NN  +  L  R
Sbjct: 405 IHRSLFPS-SSVPSDDDFMHALSLSTNSDGETLNEINTNNPEREHLIVR 452


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 17 IPDDEGNLHKVDLEAEPDYDLL-DKVNRNNANQYFL 51
          +PD + N  + D +     D+L D+VN+N  N+Y++
Sbjct: 7  LPDIDSNEGETDADVYEVEDILADRVNKNGINEYYI 42


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 3   EEPLQRGEYPRYMDIPDDEGNLHK 26
           +E  Q      Y D PDDEGN+ K
Sbjct: 124 DEAKQMASEVEYEDGPDDEGNMFK 147


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 190 AGPLWNTNSNRLRPGDGVY--VEAIHTDGSTSGLGIGSAIARTDFFPNGGNSQPGCSTSL 247
           A P   +N+    PG G++    A  ++ + +G G G+  A    F    N+    ST L
Sbjct: 263 ATPFGTSNATNTTPGSGLFGGGSAFGSNTTNTGFGSGTNNASGGLFGQNNNTTSTPSTGL 322


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,703
Number of Sequences: 5004
Number of extensions: 47037
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 4
length of query: 293
length of database: 2,362,478
effective HSP length: 72
effective length of query: 221
effective length of database: 2,002,190
effective search space: 442483990
effective search space used: 442483990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)