GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001506-TA|BGIBMGA001506-PA|IPR013818|Lipase, N-terminal,
IPR000734|Lipase, IPR002035|von Willebrand factor, type A
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547     35   0.068
10_08_0243 - 16124790-16125361,16126358-16126547                       29   5.9  
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533...    29   5.9  
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609...    28   7.8  

>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
          Length = 359

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 176 ELGGRVARITGLD-PAGPLWNTNSNRLRPGDGVYVEAIHTDGSTSGLGIGSAIARTDFFP 234
           EL   V   T  D P G  W   ++ L+  DGV     H DG        S +   D   
Sbjct: 128 ELRANVEVRTSKDGPRGASWG--NHHLQIDDGVENRTEHLDGRLEPSCPASPVEDGDS-N 184

Query: 235 NGGNSQPGCSTSLCTTIELGNYLLLRLHTTTWSALNATIWHKLRLTLAVEDALT 288
            GG ++ G STS   +I     LL     T+  A   T+W +   +LA  + LT
Sbjct: 185 QGGGAEFGISTSKSRSISGSKVLLRNRSPTSKKAAKTTVWSR-HCSLAWSEGLT 237


>10_08_0243 - 16124790-16125361,16126358-16126547
          Length = 253

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 161 AGFSLGAHVVGNAGRELGGRVARITGLDPAGPLWNTNSNRLRPGDGV-YVEAIHTDGSTS 219
           +G + GAH  G  G E GG          +G    + S+      G  Y  +    GS +
Sbjct: 122 SGGNYGAHASGGGGGEGGGYSQYGGSGSGSGSGSGSGSSEYTQNGGYGYAGSSSAGGSGA 181

Query: 220 GLGIGSAIARTDFFPNGGNSQPGCSTSLCTTIELGNY 256
           G G G A        +G  S  G  +S   T   G Y
Sbjct: 182 GAGAGQAGGYWPSSSHGSGSGMGSGSSSAATYWKGPY 218


>04_03_0857 +
           20352331-20352582,20352740-20352951,20353047-20353308,
           20353418-20353726
          Length = 344

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 159 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 194
           +L GFS+G  ++ +  + +  R+A +  L P G  W
Sbjct: 134 YLMGFSMGGEIMWSCLKHISHRLAGVAILGPVGNYW 169


>04_03_0858 +
           20357519-20357573,20358072-20358119,20360675-20360922,
           20361152-20361363,20361480-20361741,20361832-20362143
          Length = 378

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 159 HLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLW 194
           +L GFS+G  ++ +  + +  R+A +  L P G  W
Sbjct: 167 YLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,155
Number of Sequences: 37544
Number of extensions: 339530
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 5
length of query: 293
length of database: 14,793,348
effective HSP length: 81
effective length of query: 212
effective length of database: 11,752,284
effective search space: 2491484208
effective search space used: 2491484208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)