GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001506-TA|BGIBMGA001506-PA|IPR013818|Lipase, N-terminal,
IPR000734|Lipase, IPR002035|von Willebrand factor, type A
         (293 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical pr...    28   6.8  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   6.8  

>Z82259-5|CAB05125.2|  353|Caenorhabditis elegans Hypothetical
          protein C28D4.5 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 18 PDDEGNLHKVDLEAEPDYDLLDKVNRNNANQYFLFTRRN 56
          P D   +H VD   +PD  ++D+  +   NQ F F R +
Sbjct: 34 PRDALTIHNVDFVIDPDEKMVDEYMKVYGNQRFNFKRND 72


>U40421-3|AAA81439.2|  347|Caenorhabditis elegans Hypothetical
          protein C02B8.6 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 8  RGEYPRYMDIPDDEGNLHKVDLEAEPDYDLLDKVNRNNAN 47
          +G+ PR  D+ DDE  +   +++ +PD +LL      N N
Sbjct: 62 KGDAPR--DVDDDEEEVQDEEIDVKPDVNLLRAAMNANQN 99


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 150  ATGAAFSNMHLAGFSLGAHVVGNAGRELGGRVARITGLDPAGPLWNTNSNRLRPGDGVYV 209
            A+G   + M      LG H++     E+   +     L      + + +  +     + +
Sbjct: 3904 ASGGEPNEMVAQTLQLGIHLLSGGNVEIQKMLIEYLQLKKDVRFFTSMAGLMNKCSVLNL 3963

Query: 210  EAIHTDGSTSGLGIGSAIARTDFFPNGGNSQPGCS-------TSLCTTIELGNYLLLRL- 261
            E         GLG+G+ +A  D   N  ++   CS       T     +E  NYL  +  
Sbjct: 3964 EMFERQIKAEGLGMGAELASGDN-QNLNDADFTCSLFRFLQLTCEGHNLEFQNYLRTQPG 4022

Query: 262  HTTTWSALNATIWHKLRLTLAVED 285
            HTT+ + +N T+ + LRL  +V D
Sbjct: 4023 HTTSVNLINCTVDYLLRLQESVMD 4046


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,786,935
Number of Sequences: 27539
Number of extensions: 263605
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 3
length of query: 293
length of database: 12,573,161
effective HSP length: 81
effective length of query: 212
effective length of database: 10,342,502
effective search space: 2192610424
effective search space used: 2192610424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)