GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001506-TA|BGIBMGA001506-PA|IPR013818|Lipase, N-terminal,
IPR000734|Lipase, IPR002035|von Willebrand factor, type A
         (293 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52060.2 68416.m05712 expressed protein contains Pfam profile...    29   2.8  
At3g52060.1 68416.m05711 expressed protein contains Pfam profile...    29   2.8  
At3g19900.1 68416.m02520 expressed protein                             28   8.6  

>At3g52060.2 68416.m05712 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 346

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 23  NLHKVDLEAEPDYDLLDKVNRNNANQYFLFTRRNARASQTLV 64
           +L+ V + A+P   +   ++ ++ N  F+  RR ARAS TL+
Sbjct: 101 DLYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLI 142


>At3g52060.1 68416.m05711 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 346

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 23  NLHKVDLEAEPDYDLLDKVNRNNANQYFLFTRRNARASQTLV 64
           +L+ V + A+P   +   ++ ++ N  F+  RR ARAS TL+
Sbjct: 101 DLYNVYIHADPTSSVSPLLDSSSINAKFIPARRTARASPTLI 142


>At3g19900.1 68416.m02520 expressed protein
          Length = 222

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 8  RGEYPRYMDIPDDEGNLHKVDLEAEPDYDLLDKVNRNNANQ 48
          R ++ R   I DDEGNL   D E +   D   K   N+ N+
Sbjct: 59 RRKFSRICSIVDDEGNLDNSDDEEKESLDDKTKRQANDMNR 99


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,592,926
Number of Sequences: 28952
Number of extensions: 254582
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 3
length of query: 293
length of database: 12,070,560
effective HSP length: 80
effective length of query: 213
effective length of database: 9,754,400
effective search space: 2077687200
effective search space used: 2077687200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)