Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    25   0.30 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   2.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.6  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 124 ITKYFFVLNAVLIFVYNFSSPVIIAYNYISSRIAEAAFLC 163
           I KY+ +L    I VY  S+   I YN +SS+      +C
Sbjct: 326 IEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIIC 365


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 89  KIYELTQNLECLHKIILNDTR---KTELVRKNLV--LIKFITKYFFVLNAVLIFVYNF 141
           K Y+++++ E +HKI  N+     K E+    ++    +F    FF ++  L+F  +F
Sbjct: 315 KFYKVSKSGELIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFFPIDYTLVFSVSF 372


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 90  IYELTQNLECLHKIILND 107
           I E++++ E +HKI  ND
Sbjct: 933 IQEVSKSGELIHKIATND 950



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 89   KIYELTQNLECLHKIILNDTR---KTELVRKNLV--LIKFITKYFFVLNAVLIF 137
            K Y+++++ E +HKI  N+     K E+    ++    +F    FF ++  L+F
Sbjct: 1034 KFYKVSKSGELIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFFPIDYTLVF 1087


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 98  ECLHKIILND-TRKTELVRKNLVLIKFITKYFFVLNAVLIFVYNFSS 143
           E + K +  D TR+  LVRK    I +I    F  + + I +  F+S
Sbjct: 261 EIIWKKLREDYTRQCRLVRKVDKEIAYIVLLTFASDLLFILIQLFNS 307


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,012
Number of Sequences: 317
Number of extensions: 1628
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 193
length of database: 114,650
effective HSP length: 53
effective length of query: 140
effective length of database: 97,849
effective search space: 13698860
effective search space used: 13698860
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)