Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              31   0.47 
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)               27   7.6  

>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 74   VLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLIKFITK----YFF 129
            +L+ L I  L  K   +Y L  N   L+ +ILN     +L+   L L   I      Y  
Sbjct: 2080 ILNALAIYDLILKTLALYSLILNALALYSLILNALALYDLILNALALYDLILNALPLYHL 2139

Query: 130  VLNAVLIF 137
            +LNA++++
Sbjct: 2140 ILNALVLY 2147



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 74   VLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNL----VLIKFITKYFF 129
            +L+ L +  L      +Y+L  N   L+ +ILN     +L+   L    +++K +  Y  
Sbjct: 2040 ILNALVLYGLILNALALYDLILNALALNGLILNALALYDLILNALAIYDLILKTLALYSL 2099

Query: 130  VLNAVLIFVYNFSSPVIIAYNYISSRIA 157
            +LNA+ +  Y+     +  Y+ I + +A
Sbjct: 2100 ILNALAL--YSLILNALALYDLILNALA 2125



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 74   VLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRK----NLVLIKFITKYFF 129
            +L+ L +  L      +Y+L  N   L+ +ILN     +L+      N +++  +  Y  
Sbjct: 1930 ILNALAVYGLILNALALYDLILNALALYDLILNALALYDLILNAIALNGLILNALALYGL 1989

Query: 130  VLNAVLIF 137
            +LNA+ ++
Sbjct: 1990 ILNALALY 1997



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 74   VLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLIKFITKYFFVLNA 133
            +L+ L + +L      +Y+L  N   L+ +ILN      L+   LVL      Y  +LNA
Sbjct: 2100 ILNALALYSLILNALALYDLILNALALYDLILNALPLYHLILNALVL------YGLILNA 2153

Query: 134  VLIF-VYNFSSPVIIAY 149
            + ++ +Y  +   ++ +
Sbjct: 2154 LALYALYGLTERAMLVW 2170


>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 7   EELLKQIPMNFWLMGIPFDN-PKIQI---RYYVXXXXXXXXXIEEIAFFGSRMSSENFLE 62
           EE  K++ +  W+ GI     P I +   RYY+           + +   SR+ +  F  
Sbjct: 24  EETAKRLVIAAWITGILMTVVPNINMKRRRYYIDDDKYTLFCSYDNSTPTSRIINTVFSV 83

Query: 63  LTQLAPCICIGVLSVLKILALTAKRQKI 90
           L    PCI + +L V +IL    +R+++
Sbjct: 84  LVYYMPCILLSILCV-RILRFLKRRRQV 110


>SB_16403| Best HMM Match : Candida_ALS (HMM E-Value=1.7)
          Length = 2372

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 140 NFSSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKT 175
           NF+ P +  +NY ++R  E   L K Y  +Q+  K+
Sbjct: 606 NFTPPGVPQFNYRNARRLELPLLVKRYHRNQRDPKS 641


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,439,378
Number of Sequences: 59808
Number of extensions: 180411
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 13
length of query: 193
length of database: 16,821,457
effective HSP length: 78
effective length of query: 115
effective length of database: 12,156,433
effective search space: 1397989795
effective search space used: 1397989795
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)