GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.45 
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    29   0.45 
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   1.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   1.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   5.5  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   7.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.3  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   7.3  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.6  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   9.6  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 78  LKILALTAKRQKIYELTQNLECLHKI-ILNDTRKTELVRKNL 118
           L I  +  K+Q I+ L   + CL    +LN TRKTE + K+L
Sbjct: 281 LWISVIGKKQQGIFRLFSMIACLRLTRLLNITRKTETILKSL 322


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 100 LHKIILNDTRKTELVRKNLVLIKFITKYFFVLNAVLIFVYNFSSPVIIAYNYISSRIAEA 159
           LHKII++D+ K +L+ +N++   +  +   ++ A  IF   F + +I+    I     E 
Sbjct: 150 LHKIIVDDSEKWDLIERNIIPHSYKGRAVGIVAARSIF-REFGARIIVGGRRIVDDYWEG 208

Query: 160 AFLCKWY 166
            F  + +
Sbjct: 209 EFRARGF 215


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 138 VYNFSSPVIIAYNY--ISSR-IAEAAFLCKWYEMDQKSKKTI 176
           + NF  P  + Y Y   S R I+ A F+ +W+ + + +KKTI
Sbjct: 335 IKNFVVPGAVPYYYEFTSPRTISTATFIARWFFLVEDNKKTI 376


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 49  AFFGSRMSSENFL--ELTQLAPCICI------GVLSVLKILALTAKRQKIYELTQNLE 98
           A  G R+ +EN    + +   PC+C+      G  SVLKIL   A +Q  + +  NL+
Sbjct: 86  ALEGLRLQAENAAANDESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNLD 143


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)

Query: 76  SVLKILALTAKRQKIYELTQNLE--CLHKIILNDTRKTELVRKNLVLIKFITKYFFVLNA 133
           S+  I +L +KR+K+ E  +NLE   L K    + +  EL+R+    I    KYF   N 
Sbjct: 30  SIEDIHSLASKRKKLNEKKENLEDLTLLKTSAFELKLNELIRE----ISVRGKYFRHANT 85

Query: 134 VLIFVYN--FSSPVIIAYNYISS 154
            +  + +  F +PVI   N+ S+
Sbjct: 86  FVEKIKDLIFKTPVIPETNFWSA 108


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 6/41 (14%)

Query: 112 ELVRKNLVLIKFI------TKYFFVLNAVLIFVYNFSSPVI 146
           E  +K  VL+K+I      ++YF++ + +L F  N +SPV+
Sbjct: 718 EHAQKEGVLLKYIENSGLVSRYFYLKDNILYFAENRNSPVL 758


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 139 YNFSSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKTILT 178
           Y+ S+P I+  N I        F   W +MD++ ++ I++
Sbjct: 401 YSCSAPAIVFPNSIKGNKDHLKFGRSWCDMDEEDEEDIVS 440


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 79   KILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKN---LVLIKFITKYFFV-LNAV 134
            K+L +    + ++   Q L C  +I L+  +  +L  K    L L+K +   F V  N+V
Sbjct: 2985 KVLVILTNNRILFVQPQQLNCKKEIHLSKVKTVKLQSKEHIFLQLLKGVNFEFSVPENSV 3044

Query: 135  LIFVYNFSSPVIIAYNY 151
              F Y      + AY +
Sbjct: 3045 RTFFYRKIRDELAAYKH 3061


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 78  LKILALTAKRQKIYELTQNLECLHKIILNDT--RKTELVRKNLVLIK 122
           +K+ +       I +L + L+C+H+ +++DT   K ++  +++ L K
Sbjct: 59  VKVFSFPRNETTIAQLFRVLDCVHEAVISDTVITKRDIYYRDVDLFK 105


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 78  LKILALTAKRQKIYELTQNLECLHKIILNDTRKTE 112
           +K  A  +K++K+ EL+Q++  LH    ++ RKT+
Sbjct: 143 VKAPAKESKKRKVNELSQDVISLHSPKESNARKTK 177


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 91  YELTQNLECLHKIILNDTRKTELVRKNLVLIKFITKYFFVLNAVLIFVYNF 141
           Y   +  +C+  +I N        R N V++    ++ F+L  + +F++ +
Sbjct: 135 YFFHRQRQCVTLLIRNANENMRARRVNSVMLTKPKQFLFLLEFITLFIFTY 185


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 144 PVIIAYNYISSRIAEAAFLCKWYEMDQ-KSKKTILTIMIRYVVINND 189
           P    Y+   + +   +FL +  E D  ++ K+I    + Y+V+NND
Sbjct: 87  PKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQEFFLDYLVVNND 133


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,223
Number of Sequences: 5004
Number of extensions: 28828
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 13
length of query: 193
length of database: 2,362,478
effective HSP length: 69
effective length of query: 124
effective length of database: 2,017,202
effective search space: 250133048
effective search space used: 250133048
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)