GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    31   0.46 
05_04_0126 + 18252594-18256922                                         30   1.4  
03_04_0142 - 17656751-17657554                                         29   3.2  
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058...    27   9.8  
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    27   9.8  

>11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,
            6581525-6582125,6583981-6585054,6585745-6585873,
            6585925-6585963
          Length = 1471

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 75   LSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLIK 122
            LS LK L+L +   K+ +  +NL+CLH +   + RKT +V   + +IK
Sbjct: 1081 LSRLKYLSLGSATTKLPKAIENLQCLHTL---ELRKTNVVALPIEVIK 1125


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 74  VLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKT---ELVRKNLVLIK 122
           + S+L +  L+ +R  + +L   +  LH++ + D R+T   E   KN+VL+K
Sbjct: 863 ICSILHLKYLSLRRTDVADLPHEINNLHELEVLDIRQTKVSEHATKNIVLLK 914


>03_04_0142 - 17656751-17657554
          Length = 267

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 104 ILNDTRKTELVRKNLVLIKFITKYF---FVLNAVLIFVYNFSSPVIIAYNYISSRIAEAA 160
           ILN  R   L+RK+L  +  +T  F   F+   ++++    S+ V++ Y  I+   A  +
Sbjct: 188 ILNAERVQALLRKSLSFLVHLTAKFPLVFIFLLIVLYAIPASAAVLLLYILITVLFALPS 247

Query: 161 FLCKWY 166
           FL  ++
Sbjct: 248 FLILYF 253


>06_02_0107 -
           11904636-11904699,11904940-11905013,11905671-11905802,
           11910309-11911018,11911110-11911852,11911936-11913753,
           11914037-11914338
          Length = 1280

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 56  SSENFLELTQLAPCICIGVLSVLKILA--------LTAKRQKIYELTQNLECLHKIILND 107
           S  + L+L  L  C C    S LK +         L+ +R  I  L   +  LH + + D
Sbjct: 729 SQLSLLKLLDLQGCQCFDKSSYLKAICNNIALLKYLSLRRTNITHLPSEINNLHDLEILD 788

Query: 108 TRKTELVRKNLVLI 121
            R+T++  K   L+
Sbjct: 789 IRQTKVPEKETKLV 802


>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 142 SSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKTILTIMIRYVVINNDDDNQ 193
           + P I+A+N++ S  A  A     Y+  Q+ K  I+     Y  ++N  ++Q
Sbjct: 223 TEPYIVAHNFLLSHAAAVARYRTKYQAAQQGKVGIVLDFNWYEALSNSTEDQ 274


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,395,726
Number of Sequences: 37544
Number of extensions: 135787
Number of successful extensions: 352
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 6
length of query: 193
length of database: 14,793,348
effective HSP length: 78
effective length of query: 115
effective length of database: 11,864,916
effective search space: 1364465340
effective search space used: 1364465340
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)