Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
(193 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 29 2.1
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 29 2.1
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 29 2.1
Z75554-9|CAA99952.2| 278|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z46794-2|CAA86774.1| 950|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical pr... 27 6.5
U80028-5|AAG23983.1| 378|Caenorhabditis elegans Serpentine rece... 27 6.5
AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical... 27 8.6
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 27 8.6
AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine re... 27 8.6
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 55 MSSENFLELTQLAPCICIGVLSVLKILALTA-KRQKIYELTQNLECLHKIILNDTRKT-- 111
+++ + E+ P GV SV + A T K Q + + +N E ++K+++ + +K+
Sbjct: 879 VAATHVYEMRMFTPLFEQGVKSVQSVRAYTPIKIQAVVGMKRNFEIVYKVVVPENQKSII 938
Query: 112 ELVRKNLVLIKF 123
L + +V ++F
Sbjct: 939 SLTTRPVVFLRF 950
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 64 TQLAPCICIGVLSVLKIL--ALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLI 121
TQLA G++ I+ LT + +I + + + + + +R+T ++ + I
Sbjct: 280 TQLAVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETLETKERISKI 339
Query: 122 KFITKYFFVLNAVLIFVY---NFSSPVIIAYN 150
+ KY V+ + I++Y N+++P +I YN
Sbjct: 340 AILYKYLIVVTSSHIYIYSSKNWNTPTMIEYN 371
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 64 TQLAPCICIGVLSVLKIL--ALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLI 121
TQLA G++ I+ LT + +I + + + + + +R+T ++ + I
Sbjct: 280 TQLAVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETLETKERISKI 339
Query: 122 KFITKYFFVLNAVLIFVY---NFSSPVIIAYN 150
+ KY V+ + I++Y N+++P +I YN
Sbjct: 340 AILYKYLIVVTSSHIYIYSSKNWNTPTMIEYN 371
>Z75554-9|CAA99952.2| 278|Caenorhabditis elegans Hypothetical
protein ZC455.11 protein.
Length = 278
Score = 28.3 bits (60), Expect = 3.7
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 93 LTQNLECLHKIILNDTRKTELVRKNLVLIKFITKY--------FFVLNAVLIFV----YN 140
L NL L K + ND + + + L L++ I + +FVL+ V IF Y
Sbjct: 23 LVLNLHILRKFV-NDWKTWKKIDYQLFLVRIILEVINMFAAVNYFVLSTVDIFSDIIPYE 81
Query: 141 FS-SPVIIAYNYISSRIAEAAFL 162
F +P IIAYN+ +R AA +
Sbjct: 82 FIITPGIIAYNFFEARSFLAAII 104
>Z46794-2|CAA86774.1| 950|Caenorhabditis elegans Hypothetical
protein R06F6.2 protein.
Length = 950
Score = 28.3 bits (60), Expect = 3.7
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 72 IGVLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVR-------KNLVLIKFI 124
IG+L ++ KI EL LECLH ++ +T+++ + L++F+
Sbjct: 411 IGMLEPSYVMKRYLDSSKIKELCIYLECLHDAKRDNEHQTKILMNAYAKQGEKKKLMEFV 470
Query: 125 TKYFFVLNAVLIFVYNFSSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKTILTIMIRYV 184
K + + + +++ +NY +AEA+ L ++M + + I+ M +Y
Sbjct: 471 NK---ITDGTRVSRMRDVFEILLKWNY----LAEASLLATKFQMHEDALNVIIHHMHKYT 523
Query: 185 V 185
+
Sbjct: 524 M 524
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 55 MSSENFLELTQLAPCICIGVLSVLKILALTAKRQK 89
M S +L +T CIC GV L + L R+K
Sbjct: 1 MCSNRWLNVTYYVECICFGVAVFLNTILLILIREK 35
>Z81528-5|CAB04287.1| 698|Caenorhabditis elegans Hypothetical
protein F35E2.6 protein.
Length = 698
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 122 KFITKYFFVLNAVLIFVYNFSSPVIIAYNYISSRI 156
KF KY+ + ++ F + FSSP +A+N + +RI
Sbjct: 170 KFEIKYYAFIG-IVSFSFFFSSPQSVAFNSVFARI 203
>U80028-5|AAG23983.1| 378|Caenorhabditis elegans Serpentine
receptor, class w protein129 protein.
Length = 378
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/77 (19%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 63 LTQLAPCICIGVLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRKNLVLIK 122
+++++PC+ ++++ I + +K E + + +D+RKT + + ++
Sbjct: 226 ISKISPCLLFPIVTIFLIKEI----RKADENRRKISSSSSAKTSDSRKTSRLVLYMTIMF 281
Query: 123 FITKYFFVLNAVLIFVY 139
F++ + + LN V+ F Y
Sbjct: 282 FVSGFPYGLNTVVGFYY 298
>AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical
protein F41E6.14 protein.
Length = 656
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/48 (18%), Positives = 29/48 (60%)
Query: 129 FVLNAVLIFVYNFSSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKTI 176
+ L +++F++ +P ++Y +++SR+ + +++ QK+ +T+
Sbjct: 167 YSLAIIILFLFQLLTPFELSYCFLASRVWQFLLGSVAFDLSQKNNETM 214
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 136 IFVY-NFSSPVIIAYNYISSRIAEAAFLCKWYEMDQKSKKTILTIMIRYVVI 186
+F Y +S P N I+ ++ ++ KW ++ +TI + +RYV +
Sbjct: 1664 VFAYVGYSIPKRNLNNIITEPLSSSSIRVKWDAWPKEDSETITSFKVRYVPV 1715
>AC006675-2|AAK84549.1| 333|Caenorhabditis elegans Serpentine
receptor, class h protein34 protein.
Length = 333
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 13 IPMNFWLMGIPFDNPKIQIRYYVXXXXXXXXXIEEIAFFGSRMSSENFLELTQLAPCICI 72
IPM FW + + K +I Y + GS + SE F+ + + I +
Sbjct: 153 IPMTFWCLPDQYTE-KFRIVYNAKFYPDGLWDSTVVVTSGSDLESERFVSIITILNSIIV 211
Query: 73 GVL 75
G+L
Sbjct: 212 GIL 214
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.328 0.142 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,289,884
Number of Sequences: 27539
Number of extensions: 150101
Number of successful extensions: 513
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 11
length of query: 193
length of database: 12,573,161
effective HSP length: 78
effective length of query: 115
effective length of database: 10,425,119
effective search space: 1198888685
effective search space used: 1198888685
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)
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