GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    27   0.12 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.8  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 153 SSRIAEAAFLCKWYEMDQKSK 173
           SS + EAA+ C WY+  +++K
Sbjct: 184 SSSVMEAAYSCHWYDGSEEAK 204


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 67 APCICIGVLSV 77
          A CIC+G LS+
Sbjct: 9  AICICVGALSI 19


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 60  FLELTQLAPCICIGVLSVLKILALTAKRQKI 90
           F  +  + PC+ I  LSVL         +KI
Sbjct: 237 FYTVNLIVPCVSISYLSVLAFYLPADSGEKI 267


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,138
Number of Sequences: 429
Number of extensions: 1874
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 140,377
effective HSP length: 54
effective length of query: 139
effective length of database: 117,211
effective search space: 16292329
effective search space used: 16292329
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)