GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001505-TA|BGIBMGA001505-PA|undefined
         (193 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR ...    29   1.5  
At1g75140.1 68414.m08728 expressed protein                             29   1.5  
At4g13985.1 68417.m02163 F-box family protein contains F-box dom...    28   4.7  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    27   6.2  

>At5g47260.1 68418.m05827 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 83  LTAKRQKIYELTQNLECLHKII--LNDTRKTELVR 115
           L  KR+ +Y L +NLE LHK++  LN  R   L R
Sbjct: 16  LCGKRKYLYNLERNLEALHKVMQDLNAMRNDLLKR 50


>At1g75140.1 68414.m08728 expressed protein
          Length = 617

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 85  AKRQKIYELTQNLECLHKIILNDTR--------KTELVRKNLVLIKFITKYFFVLNAVLI 136
           ++R K Y  T   E +H ++L D          K ++  +  V ++ I  Y  ++N   +
Sbjct: 327 SERAKAYGFTSEGEIIHVLLLGDIMNFKCRVRSKKKVQMEEPVALQAIKGYLLIVNQEKV 386

Query: 137 FVYNFSS 143
           FVYN S+
Sbjct: 387 FVYNVST 393


>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 57  SENFLELTQLAPCICIGVLSVLKILALTAKRQKIYELTQNLECLHKIILNDTRKTELVRK 116
           S N + L  ++  + +   S+L   +  A      E+  +   LH + LND R    + K
Sbjct: 208 SVNKINLNDISESVQVSSQSLLSF-SYVADDDDYLEVVIDAPRLHYLKLNDKRTASFIMK 266

Query: 117 NLVLIKFITKYFFVLNAVLIFVYNFSSPVIIAYNYISSR 155
           N         +  +L A + FV+N  S  +   NY+ +R
Sbjct: 267 N---------HGSLLKADIDFVFNLGSEYMFDPNYLPTR 296


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 95  QNLECLHKIILNDTRKTELVRK 116
           +NL CLHK+ L++T   EL  K
Sbjct: 816 ENLSCLHKVNLSETNLGELPNK 837


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.142    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,905,666
Number of Sequences: 28952
Number of extensions: 128439
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 12,070,560
effective HSP length: 77
effective length of query: 116
effective length of database: 9,841,256
effective search space: 1141585696
effective search space used: 1141585696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)