GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001504-TA|BGIBMGA001504-PA|IPR002557|Chitin binding
Peritrophin-A
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   5.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   6.8  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   8.9  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 60   TRFYKCAEG-RPVALKCPPNLLFNPSNEQC 88
            ++F +C E  RP+ LK P +L+  PS   C
Sbjct: 1149 SKFSQCGEDQRPMVLKDPDHLVPEPSRPHC 1178


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 134 SLATEIC-AEKDSDGVLVAHEHCTRFYKCFDSH--PVALICPPNL 175
           S AT +   E D D  L+ H H T  +K F+ H   + L+  P+L
Sbjct: 294 SAATSLAPVEDDEDDELLLHRHITNKHKDFNLHVKQLGLLHKPSL 338



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 230 SLATEIC-AEKDSDGVLVAHEHCTRFYKCFDSH--PVALICPPNL 271
           S AT +   E D D  L+ H H T  +K F+ H   + L+  P+L
Sbjct: 294 SAATSLAPVEDDEDDELLLHRHITNKHKDFNLHVKQLGLLHKPSL 338


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 163  DSHPVALICPPNLLYNPNNEQCD 185
            D H +A +  PN+LY+ +N+  D
Sbjct: 996  DIHNLATVITPNILYSKSNDPVD 1018



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 259  DSHPVALICPPNLLYNPNNEQCD 281
            D H +A +  PN+LY+ +N+  D
Sbjct: 996  DIHNLATVITPNILYSKSNDPVD 1018


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,300
Number of Sequences: 5004
Number of extensions: 47340
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 5
length of query: 342
length of database: 2,362,478
effective HSP length: 73
effective length of query: 269
effective length of database: 1,997,186
effective search space: 537243034
effective search space used: 537243034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)