GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001504-TA|BGIBMGA001504-PA|IPR002557|Chitin binding
Peritrophin-A
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054...    31   1.3  
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304...    28   9.4  

>01_03_0285 -
           14604499-14604608,14604692-14605203,14605339-14605418,
           14605597-14605699,14605759-14605907,14606088-14606180,
           14606289-14606675,14607690-14608124,14608198-14608311,
           14608405-14608453,14608684-14608843,14608941-14609499
          Length = 916

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 141 AEKDSDGVLVAHEHCTRFYKCFDSHPVALI 170
           +EKD DGV+  H HC+  Y+  D+    ++
Sbjct: 806 SEKDKDGVIELHNHCSSVYQEGDARSALIV 835



 Score = 31.1 bits (67), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 237 AEKDSDGVLVAHEHCTRFYKCFDSHPVALI 266
           +EKD DGV+  H HC+  Y+  D+    ++
Sbjct: 806 SEKDKDGVIELHNHCSSVYQEGDARSALIV 835


>01_06_0486 -
           29729333-29729356,29729856-29730106,29730364-29730466,
           29730571-29730663,29730773-29730905,29731184-29731272,
           29731385-29731553,29731930-29732016,29732388-29732506,
           29732554-29732706
          Length = 406

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 130 HADPSL-ATEICAEKDSDGVLVAHEHCTRFYKCFDSHP 166
           H DP L A  + A K + G   A +H +   K F S+P
Sbjct: 267 HQDPKLHAQRVAAIKKTKGTAAARKHASETQKAFFSNP 304



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 226 HADPSL-ATEICAEKDSDGVLVAHEHCTRFYKCFDSHP 262
           H DP L A  + A K + G   A +H +   K F S+P
Sbjct: 267 HQDPKLHAQRVAAIKKTKGTAAARKHASETQKAFFSNP 304


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,362
Number of Sequences: 37544
Number of extensions: 306325
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 5
length of query: 342
length of database: 14,793,348
effective HSP length: 83
effective length of query: 259
effective length of database: 11,677,196
effective search space: 3024393764
effective search space used: 3024393764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)