GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001504-TA|BGIBMGA001504-PA|IPR002557|Chitin binding
Peritrophin-A
         (342 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28540.1 68415.m03467 expressed protein                             29   3.4  
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein...    28   7.9  

>At2g28540.1 68415.m03467 expressed protein 
          Length = 655

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 26  TNKATKGVNFES-GKATEICARIGSDGILVAHEHCTRFYKCAEGRPVALKCPPNLLFNPS 84
           TN    GV+ E   + T + + +G+   L A +  + FY+     P  L C  N    PS
Sbjct: 188 TNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPS 247

Query: 85  N 85
           N
Sbjct: 248 N 248


>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 393

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 130 HADPSL-ATEICAEKDSDGVLVAHEHCTRFYKCFDSHPV 167
           H DP L A  + A K + G   A +H +   K F S+PV
Sbjct: 212 HRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPV 250



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 226 HADPSL-ATEICAEKDSDGVLVAHEHCTRFYKCFDSHPV 263
           H DP L A  + A K + G   A +H +   K F S+PV
Sbjct: 212 HRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPV 250


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,265,580
Number of Sequences: 28952
Number of extensions: 252559
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 3
length of query: 342
length of database: 12,070,560
effective HSP length: 82
effective length of query: 260
effective length of database: 9,696,496
effective search space: 2521088960
effective search space used: 2521088960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)