Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001503-TA|BGIBMGA001503-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
         (534 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   1.00 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   1.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   1.7  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    24   2.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   9.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   9.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 281 KKQQVISKQRSKYEAIDYSS-LYKKFDSSKLDNSNYEYKHLEDVIKQNIR 329
           K   +  K+  K E  D     +KK DSSK   + Y Y+ ++DVI++  R
Sbjct: 207 KSASIPKKKEVKEEIEDEPDHKWKKNDSSK-KKTRYYYRSVDDVIEKGKR 255


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 469 HGNHTHILPNNSVTNVVLQNLNLCTPDEIEKHIDNLDPNTSTGID 513
           H  H+H   +  +  V   +  +  PD+ E H  N+DPN  T I+
Sbjct: 15  HVQHSHGATDKVICYVA--SWAIYRPDKGEYHPKNIDPNICTHIN 57


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 118 PNYTHHYSYRNDIRGGGVSIYVHNNIKHSTTEDKYSNGN 156
           PNY +HY Y     GG V+   + ++ H      Y N N
Sbjct: 386 PNY-NHYGYHYSGDGGEVAHLPNTHMGHEPGAAYYQNEN 423


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 118 PNYTHHYSYRNDIRGGGVSIYVHNNIKHSTTEDKYSNGN 156
           PNY +HY Y     GG V+   + ++ H      Y N N
Sbjct: 334 PNY-NHYGYHYSGDGGEVAHLPNTHMGHEPGAAYYQNEN 371


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 479 NSVTNVVLQNLNLCTPDEIEKHIDNL 504
           NS+ N+ L+N  LC   + +K +  L
Sbjct: 24  NSILNIALKNFRLCKKHKTKKPVQIL 49


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 479 NSVTNVVLQNLNLCTPDEIEKHIDNL 504
           NS+ N+ L+N  LC   + +K +  L
Sbjct: 24  NSILNIALKNFRLCKKHKTKKPVQIL 49


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 39  RIGILQIENISYQITNDYSQIETFYPSLN 67
           R G L      YQ+T+ Y +I+  +P L+
Sbjct: 270 RFGCLSTRLFYYQLTDLYKKIKKAFPPLS 298


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 474 HILPNNSVTNVVLQNLNLCTPDE 496
           H+   NS T  +L+N +L +PDE
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDE 107


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 474 HILPNNSVTNVVLQNLNLCTPDE 496
           H+   NS T  +L+N +L +PDE
Sbjct: 85  HLDFRNSATAELLKNPSLSSPDE 107


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,174
Number of Sequences: 317
Number of extensions: 6272
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 9
length of query: 534
length of database: 114,650
effective HSP length: 60
effective length of query: 474
effective length of database: 95,630
effective search space: 45328620
effective search space used: 45328620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)