Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001503-TA|BGIBMGA001503-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 40 0.005
At4g01790.1 68417.m00235 ribosomal protein L7Ae/L30e/S12e/Gadd45... 34 0.21
At5g56380.1 68418.m07038 F-box family protein similar to unknown... 34 0.27
At2g34670.1 68415.m04259 proline-rich family protein contains pr... 34 0.27
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 33 0.36
At5g25870.1 68418.m03069 hypothetical protein 33 0.63
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 32 0.83
At4g39290.1 68417.m05564 kelch repeat-containing F-box family pr... 31 1.9
At4g24400.1 68417.m03499 CBL-interacting protein kinase 8 (CIPK8... 31 1.9
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 31 2.5
At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH ba... 30 3.3
At4g37950.1 68417.m05365 expressed protein 30 3.3
At2g47390.1 68415.m05915 expressed protein 30 3.3
At1g16150.1 68414.m01935 wall-associated kinase, putative contai... 30 3.3
At5g41360.1 68418.m05026 DNA repair protein and transcription fa... 30 4.4
At5g37080.1 68418.m04451 hypothetical protein includes At5g37080... 30 4.4
At2g46710.1 68415.m05828 rac GTPase activating protein, putative... 30 4.4
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 30 4.4
At4g31570.1 68417.m04483 expressed protein 29 5.8
At4g20050.1 68417.m02934 expressed protein C65DMY30S 29 5.8
At2g19390.1 68415.m02262 expressed protein 29 5.8
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1... 29 7.7
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1... 29 7.7
At4g39060.1 68417.m05532 F-box family protein low similarity to ... 29 7.7
At3g28770.1 68416.m03591 expressed protein 29 7.7
At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR al... 29 7.7
At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR al... 29 7.7
At1g10570.2 68414.m01191 Ulp1 protease family protein contains P... 29 7.7
At1g10570.1 68414.m01190 Ulp1 protease family protein contains P... 29 7.7
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 39.5 bits (88), Expect = 0.005
Identities = 43/200 (21%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 207 DLLQEDKQTKMYKQMLCEN--GYKILNKVEEEYCTR-----ETSTTRTILDHVTTNL--- 256
DLL+E K + L E+ K+ +K + E TR E +L+ L
Sbjct: 327 DLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRLQFEGRDPWVLLEETREELDYE 386
Query: 257 KNKNVHLAI-VESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNY 315
K++N +L + +E + ++ +A++ + + +++SK A + ++ S+ D ++
Sbjct: 387 KDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDEDDH 446
Query: 316 EYKHLEDVIKQNI--RENTKTKSKILNLPQQDWITKNITDGIN---RRNKLWYKLKKDPN 370
+ K LED++K+++ ++ + KI +L + I K D + + L Y++ K N
Sbjct: 447 DQKALEDLVKKHVDAKDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQN 506
Query: 371 NEDLKANFKTERNQVTRDIQ 390
++ ++K E++Q+ ++
Sbjct: 507 HD---ISYKLEQSQLQEQLK 523
>At4g01790.1 68417.m00235 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein / ribonuclease P-related similar to human
RNaseP-associate protein P38, GenBank accession number
U77664
Length = 167
Score = 34.3 bits (75), Expect = 0.21
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 306 DSSKLDNSNY----EYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKL 361
DS+ + S+Y HL D+I++ I T S + +LP++ W+ K I GIN ++
Sbjct: 16 DSNPVKESDYYEGERLTHLLDLIQRGIE--TSKLSNVNSLPEKIWLKKQIAIGINEVTRV 73
Query: 362 WYKLKKDPNN 371
++ +PNN
Sbjct: 74 LERM--NPNN 81
>At5g56380.1 68418.m07038 F-box family protein similar to unknown
protein (emb|CAB62440.1); contains Pfam profile PF00646:
F-box domain
Length = 439
Score = 33.9 bits (74), Expect = 0.27
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 267 ESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLED 322
+SC K I +KK + K++ KY ID S + LD + +Y H+ D
Sbjct: 196 DSCALSFKIILPCLKKLSYLPKRKKKYSGIDRSEVSGGISGLVLDAPSLKYLHIVD 251
>At2g34670.1 68415.m04259 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 561
Score = 33.9 bits (74), Expect = 0.27
Identities = 17/80 (21%), Positives = 40/80 (50%)
Query: 262 HLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLE 321
H + +E + K++Y ++ +++ + + A+ + +D SK++ + + LE
Sbjct: 335 HCSTLEKLYTAEKKLYQLVRNKEIAKVEHERKSALLQKQDGETYDLSKMEKARLSLESLE 394
Query: 322 DVIKQNIRENTKTKSKILNL 341
I++ T T+S +LNL
Sbjct: 395 TEIQRLEDSITTTRSCLLNL 414
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 33.5 bits (73), Expect = 0.36
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 206 LDLLQEDKQTKMYKQMLCENGYKILNKVEEEYCTRETSTTRTILDHVTTNLKNKNVHLAI 265
LD+ ED + K ++ +C L+ V E T E S ++D + N++ ++V +
Sbjct: 208 LDVDLEDVKGKSFE--ICSTELFSLSTVSENSLTDEMSQEEVVIDEDSPNVEPEDVKGKL 265
Query: 266 VESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLY 302
E C + QI + + +K +D SL+
Sbjct: 266 FEICYTRKLQIQTGSSGNPLTYEMTTKQMVVDKDSLH 302
>At5g25870.1 68418.m03069 hypothetical protein
Length = 173
Score = 32.7 bits (71), Expect = 0.63
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 349 KNITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTRDI-QSAKRKYYLDAFNKCSKK 407
+ I++ + + K +Y+L++ N E+L+ KT + + R++ +S+K K D K +
Sbjct: 75 EEISEILVKLEKKYYELEEVENRENLQMKEKTLKRKYKRELKKSSKIKELEDRMIKAGQ- 133
Query: 408 PKKMWSLINTLATNKLKKKCLLPKIHSTEGRIIQEDHI 445
IN +LKKKC KI E RI +E I
Sbjct: 134 -------INDEHERELKKKC--SKIKELEDRIRKEGQI 162
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 32.3 bits (70), Expect = 0.83
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 212 DKQTKMYKQMLCENGYK--ILNKVEEEYCTRETSTTRTILDH--VTTNLKNK----NVHL 263
D + ++Y LC + +L + +EY + R +LDH + +LK K V
Sbjct: 1783 DTEVQLYLMDLCSKDVELLVLAQTAKEYSSCLAVVDRELLDHHVIVEDLKEKLIVSQVEG 1842
Query: 264 AIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEY 317
+ + C+ D+K V++K++ ++ + K + D +K +++D N ++
Sbjct: 1843 ELKDQCLVDNKLETVSVKEELTEAQSKIKVLSSDLDRSVQKI--AEIDEVNKDF 1894
>At4g39290.1 68417.m05564 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 365
Score = 31.1 bits (67), Expect = 1.9
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 60 ETFYPSLNFLYANVRSIVKPGKFDELKCVLKSIDKGVHVVLLTET 104
+ +YPSL+F+ RS++ + EL+ L G++V L T
Sbjct: 30 KVYYPSLSFVSKKFRSLIASTELQELRSFLGCTSSGLYVCLRFRT 74
>At4g24400.1 68417.m03499 CBL-interacting protein kinase 8 (CIPK8)
identical to CBL-interacting protein kinase 8
[Arabidopsis thaliana] GP|13249115|gb|AAK16683; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain
Length = 445
Score = 31.1 bits (67), Expect = 1.9
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 293 YEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNIT 352
++ +D +LY K D ++ +Y + +I + + N +T+ I + + +W K+ T
Sbjct: 208 FDEMDLPTLYSKIDKAEFSCPSYFALGAKSLINRILDPNPETRITIAEIRKDEWFLKDYT 267
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 30.7 bits (66), Expect = 2.5
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 310 LDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLWYKLKKDP 369
+D + K + +K I EN K +KI + I D + KL Y++K+
Sbjct: 223 VDTFRKKRKEFNEEMKSKITENQKLHTKIA-------VIDEIED---KSKKLEYQVKEQ- 271
Query: 370 NNEDLKANFKTERNQVTRDIQSAKRKYYLDAFNKCSKKPKKMWSLINTLATNKLKKKCLL 429
ED+ E + ++ ++K +D F++ +K K WS + L TN L+KK +
Sbjct: 272 --EDIIQRLSMEIKDQKKLLK--EQKDAIDKFSE-DQKLMKRWSFGSKLNTNLLEKK--M 324
Query: 430 PKIHSTEGRIIQEDHI 445
++ + + R+ EDHI
Sbjct: 325 EEL-AEDFRMKMEDHI 339
>At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH basal
transcription factor complex helicase XPB subunit,
putative (XPB1) contains Pfam profile PF00271:Helicase
conserved C-terminal domain; identical to cDNA putative
DNA repair protein (XPB1) GI:10314019
Length = 767
Score = 30.3 bits (65), Expect = 3.3
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 59 IETFYP----SLNFLYANVRSIVKPGKFDELKCVLKSIDKGVHVVLLTETWIKSENDAMK 114
+ETF P + +FL A + +P E S+ V V L TET I N K
Sbjct: 76 LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSK 135
Query: 115 LHLPNYTHHYSYRNDIRGGGVSIYVHNN 142
LP + + + G V + + N
Sbjct: 136 TKLPKEMIEFIHASTANYGKVKLVLKKN 163
>At4g37950.1 68417.m05365 expressed protein
Length = 678
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 148 TEDKYSNGNNYLWVYLEQHGLHVGVVYKPGSTNTEDFLI 186
T KY+ NN L +E G V YKPG ++ D+L+
Sbjct: 80 TRIKYNGLNNVLNDQIENRGYWDVVWYKPGQVSSTDYLV 118
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 258 NKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYS-SLYKKFDSSKLDNSNYE 316
+K + V + MSD K+ + +++ ++++ + SK E YS L+ ++ N +
Sbjct: 585 DKEKYFETVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHP 644
Query: 317 YKHLEDVIKQNIRENTK 333
Y L + K+ IR K
Sbjct: 645 YPQLASLQKEMIRYQRK 661
>At1g16150.1 68414.m01935 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 779
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 18 RTSNSRILTKKLCAGNKQSSTRI--GILQIENISYQITNDYSQIE 60
R S+S+++ K+C+GNK TRI G Q+ ++ +I + + E
Sbjct: 165 RNSSSQVVRNKICSGNKCCQTRIPEGQPQVIGVNIEIPENKNTTE 209
>At5g41360.1 68418.m05026 DNA repair protein and transcription
factor, putative (XPB2) similar to SP|P49135 TFIIH basal
transcription factor complex helicase XPB subunit (EC
3.6.1.-) (Basic transcription factor 2 89 kDa subunit)
{Mus musculus}; contains Pfam profile PF00271: Helicase
conserved C-terminal domain; contains TIGRfam profile
TIGR00603: DNA repair helicase rad25
Length = 766
Score = 29.9 bits (64), Expect = 4.4
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 59 IETFYP----SLNFLYANVRSIVKPGKFDELKCVLKSIDKGVHVVLLTETWIKSENDAMK 114
+ETF P + +FL A + +P E S+ V V L TET I N K
Sbjct: 76 LETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSK 135
Query: 115 LHLPNYTHHYSYRNDIRGGGVSIYVHNN 142
LP + + + G V + + N
Sbjct: 136 TKLPGEIIDFIHASTANYGKVKLVLKKN 163
>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 566
Score = 29.9 bits (64), Expect = 4.4
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 214 QTKMYKQMLCENGY-KILNKVEEEYCTRETSTTRTILDHVTTNLKNKNVH--LAIVESCM 270
QT K M+ EN K++ K EE + TI+ V TNL K H +++ ++ +
Sbjct: 361 QTAEIKLMVFENNATKLIGKSSEELVDGQYEEDPTIISDVITNLCGKTFHFLVSVEKANI 420
Query: 271 SDHKQIYVAIK 281
K IY K
Sbjct: 421 YGGKDIYKVTK 431
>At2g46710.1 68415.m05828 rac GTPase activating protein, putative
similar to rac GTPase activating protein 2 [Lotus
japonicus] GI:3695061; contains Pfam profiles PF00620:
RhoGAP domain, PF00786: P21-Rho-binding domain
Length = 455
Score = 29.9 bits (64), Expect = 4.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 481 VTNVVLQNLN--LCTPDEIEKHIDNLDPNTSTGIDGISAKTLKC 522
V++V N L P E+E + P+ S + G+SAK+++C
Sbjct: 114 VSHVTFDRFNGFLGLPSELEPEVPPRAPSASVSVFGVSAKSMQC 157
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 29.9 bits (64), Expect = 4.4
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 252 VTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLD 311
VT + L++ E + HK+ I +++IS++ + A+ SL S +
Sbjct: 488 VTIDSATLESKLSVSEQLIEYHKE---NITSEEMISEENHQSSAMKDGSLDPS--SGSIG 542
Query: 312 NSNYEYKHLEDVIKQNIR------ENTKTKSKILNLPQQDWITKNITDGINRRNKLWYKL 365
N K +E + N+ E ++ K + +L +QD ++ D N Y++
Sbjct: 543 NEPKAIKRMEIPVVANVSGALTKDELSEAKQRENSLVEQDLKMESTKDKKNALESFVYEM 602
Query: 366 KKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLD 399
+ N ++ER + R++Q + Y D
Sbjct: 603 RDKMLNTYRNTATESERECIARNLQETEEWLYED 636
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 29.5 bits (63), Expect = 5.8
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 7/163 (4%)
Query: 284 QVISKQRSKYEAIDYSSLYKKFDSS-KLDNSNYEYKHLEDVIKQN-IRENTKTKSKILNL 341
+ S+ + E D +SL K D + + E + L +Q+ + EN KI+ L
Sbjct: 1788 EATSRDIAVVETPDVASLTKDLDQALHVQKLTREERDLYMAKQQSLVAENEALDKKIIEL 1847
Query: 342 PQQDWITKNITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAF 401
Q+++ + + R KL ++K + + K +V ++ K + +
Sbjct: 1848 --QEFLKQEEQKSASVREKLNVAVRKGKALVQQRDSLKQTIEEVNAELGRLKSEI-IKRD 1904
Query: 402 NKCSKKPKKMWSLIN-TLATNKLKKKCLLPKIHSTEGR-IIQE 442
K + KK L + ++ L+ +C L KIHS E ++QE
Sbjct: 1905 EKLLENEKKFRELESYSVRVESLESECQLLKIHSQETEYLLQE 1947
>At4g20050.1 68417.m02934 expressed protein C65DMY30S
Length = 481
Score = 29.5 bits (63), Expect = 5.8
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 413 SLINTLATNKLKKKCLLPKIHSTEGRIIQEDHICEYFNKFFSTVGTTLADKIPQKFHGNH 472
++IN+L T+ C + + T G +++ H N F T D+ + F G
Sbjct: 199 AVINSLRTSI--DNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTA 256
Query: 473 THILPN-NSVTNVVL 486
+++ N N+VT+ V+
Sbjct: 257 INLMGNDNAVTDTVI 271
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 271 SDHKQIYVAIKKQQVIS-KQRSKYEAIDYSSLYKKFDSSKL 310
SDH +Y +++ ++S K+R ++ S+++ +F+SS L
Sbjct: 349 SDHNSLYSEKRERSIVSDKERVNLRGVNKSNIHDEFNSSSL 389
>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 867
Score = 29.1 bits (62), Expect = 7.7
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 108 SENDAMKLHLPNYTH--HYSYRNDIRGGGVSIYVHNNIKHSTT-----EDKYSNGNNYLW 160
S N M L L YTH ++ + G++ ++H +S D + +++
Sbjct: 133 SLNSPMSLSLSKYTHLIQATHNSASEVKGITAFLHGFDWNSVALVLEDHDDWRESMHFMV 192
Query: 161 VYLEQHGLHVGVVYKPGSTNTEDFLIDYEQQLHDRNRTI 199
+ ++ +HV T++ED L+D ++L D T+
Sbjct: 193 DHFHENNVHVQSKVAFSVTSSEDSLMDRLRELKDLGTTV 231
>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 750
Score = 29.1 bits (62), Expect = 7.7
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 108 SENDAMKLHLPNYTH--HYSYRNDIRGGGVSIYVHNNIKHSTT-----EDKYSNGNNYLW 160
S N M L L YTH ++ + G++ ++H +S D + +++
Sbjct: 133 SLNSPMSLSLSKYTHLIQATHNSASEVKGITAFLHGFDWNSVALVLEDHDDWRESMHFMV 192
Query: 161 VYLEQHGLHVGVVYKPGSTNTEDFLIDYEQQLHDRNRTI 199
+ ++ +HV T++ED L+D ++L D T+
Sbjct: 193 DHFHENNVHVQSKVAFSVTSSEDSLMDRLRELKDLGTTV 231
>At4g39060.1 68417.m05532 F-box family protein low similarity to
SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 375
Score = 29.1 bits (62), Expect = 7.7
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 350 NITDGINRRNKLWYKLKKDPNNEDLKANF----KTERNQVTRDIQSAKRKYYLDAFNKCS 405
NI I ++N K KK+ +++ K +F K ++ +V +D S KY + + +
Sbjct: 192 NICVTIKKKNVESKKKKKNVESKNKKKDFVYLLKEKKWEVVKDHSSLVEKYCVIENVEYT 251
Query: 406 KKPKKMWSLINTLATNKLKKKCLLPKIHSTEGRIIQEDHICEYFNK 451
K+ W + T + ++ L+ + + +I + C Y K
Sbjct: 252 YADKRCWWMETTSSEESSEEWRLVNGLTGLDAYVINDTEFCTYGGK 297
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 7.7
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 11/219 (5%)
Query: 211 EDKQTKMYKQMLCENGYKILNKVEEEYCTRETSTTRTILDHVTTNLKNKNVHLAIVESCM 270
E+K++K ++ E K +K EE + E + + + +LK K E
Sbjct: 1016 EEKKSKTKEEAKKEKK-KSQDKKREEKDSEERKSKKE--KEESRDLKAKKKEEETKEKKE 1072
Query: 271 SD-HKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIR 329
S+ HK KK+ +K K E +++ S K + + + LED +
Sbjct: 1073 SENHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKK 1132
Query: 330 E--NTKTKSKILNLPQQDWITKNITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTR 387
E N K KS+ + L +++ K + + + K NE K K+ ++Q
Sbjct: 1133 EDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQ--- 1189
Query: 388 DIQSAKRKYYLDAFNKCSKKPKKMWSLINTLATNKLKKK 426
Q K K ++ K KK ++ ++ NK +K+
Sbjct: 1190 --QKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKE 1226
>At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 295
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 359 NKLWY-KLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFN 402
+KL+Y LK++P LK + KT + T + S+ ++LD FN
Sbjct: 40 HKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFN 84
>At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 296
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 359 NKLWY-KLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFN 402
+KL+Y LK++P LK + KT + T + S+ ++LD FN
Sbjct: 40 HKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFN 84
>At1g10570.2 68414.m01191 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to EST gb|N96456
Length = 570
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 319 HLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLWYKLKKDPNNEDLKANF 378
H D +K + K+ +L + WI+K D I +N +W L + + NF
Sbjct: 159 HFSDNLKMGPQPVKLVNDKLQDLGRGSWISKANRDSIIEKNNVWRSLPRLSKCKVSLKNF 218
Query: 379 KTE 381
+E
Sbjct: 219 YSE 221
>At1g10570.1 68414.m01190 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to EST gb|N96456
Length = 571
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 319 HLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLWYKLKKDPNNEDLKANF 378
H D +K + K+ +L + WI+K D I +N +W L + + NF
Sbjct: 160 HFSDNLKMGPQPVKLVNDKLQDLGRGSWISKANRDSIIEKNNVWRSLPRLSKCKVSLKNF 219
Query: 379 KTE 381
+E
Sbjct: 220 YSE 222
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,884
Number of Sequences: 28952
Number of extensions: 595537
Number of successful extensions: 1714
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 42
length of query: 534
length of database: 12,070,560
effective HSP length: 84
effective length of query: 450
effective length of database: 9,638,592
effective search space: 4337366400
effective search space used: 4337366400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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