Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001503-TA|BGIBMGA001503-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 35 0.033
SPBC216.06c |swi1||replication fork protection complex subunit S... 34 0.043
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 31 0.30
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.30
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 31 0.53
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 30 0.70
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 30 0.93
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 1.6
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 1.6
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 2.1
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 29 2.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 2.8
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 28 3.7
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 28 3.7
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 4.9
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 4.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 4.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 6.5
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 27 8.6
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 8.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 27 8.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 8.6
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 34.7 bits (76), Expect = 0.033
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 QRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNL-PQQDWI 347
Q K EA Y S +K DS++L ++ HLE I N+ E T+ K+ + L ++D
Sbjct: 210 QEQKTEAERYQSQKEKRDSAQLVYLLWKLFHLEKSISSNMAEVTRLKADSIQLIERRDEN 269
Query: 348 TKNI-----TDGINRRNKLWYKLKKDPNNEDLKANFKTE 381
TK I +G RRN L + +K E L A+ + E
Sbjct: 270 TKEIEKLKEKEGSIRRNLLAFD-RKVRKQEKLIASKRPE 307
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 34.3 bits (75), Expect = 0.043
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 225 NGYKILNKVEEEYCTRETSTTRTILDHVTTNLKNKNVHLA--IVESCMSDHKQIYVAIKK 282
N + LNK+ + ++ T TI+DH T K ++ A IV+S D + +A +
Sbjct: 873 NRREALNKITDRK-RKKMKTNETIIDHTTRKKKENHLRSAKYIVDS--DDDSETDIAFFQ 929
Query: 283 QQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLED 322
+ ++++ +A S+L+K+ D +++ E + L +
Sbjct: 930 SEAALREKNAQKA---SALFKRIDDLEMEGKLQEIEQLSE 966
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 31.5 bits (68), Expect = 0.30
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 250 DHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYK-----K 304
D NLK+ L+ D K + + + + S + +I Y+ L K
Sbjct: 2075 DLADENLKHDIDFLSSKILWQRDEKIDAIGMLSESLSKTNSSIFPSISYAYLGNWLYTTK 2134
Query: 305 FDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLWYK 364
+ ++L + NY K L + N +E K ++ + ++T+ R KL+++
Sbjct: 2135 SEKTELVSKNYFEKSLSHMSHLNAKEKAKIYCMFAQFCDNNYSSPDLTEDFKRMEKLYFE 2194
Query: 365 LKKD 368
K D
Sbjct: 2195 KKND 2198
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.5 bits (68), Expect = 0.30
Identities = 48/229 (20%), Positives = 94/229 (41%), Gaps = 12/229 (5%)
Query: 290 RSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITK 349
R E ++ +K KL+NSN EYK I ++ +T T S L + +
Sbjct: 1271 RLNKEQLESQLQTEKAAVKKLENSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKE 1330
Query: 350 NITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFNKCSKKPK 409
N+ + +N+ LK + E +K+ + N+ ++ QS + L +
Sbjct: 1331 NLIEELNQEIG---HLKSE--LETVKSKSEDLENERAQN-QSKIEQLELKNTKLAAAWRT 1384
Query: 410 KMWSLIN-TLATNKLKKKCLLPKIHSTEGRIIQEDHICEYFNKFFST-VGTTLADKIP-- 465
K ++N +L + ++ L K E ++ + + E NK +T TT ++
Sbjct: 1385 KYEQVVNKSLEKHNQIRQQLSQKTSELEAKVAECHQLNEQLNKPSATPTATTQSEPSTVS 1444
Query: 466 -QKFHGNHTHILPNNSVTNVVLQNLNLCTPDEIEKHIDNLDPNTSTGID 513
++F+ + + ++ LN T +E+EK N + + T D
Sbjct: 1445 LEEFNSTKEELSSTQRKLSEIMDILN-TTKEELEKVRQNSNKSEGTSKD 1492
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 30.7 bits (66), Expect = 0.53
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 286 ISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIK 325
ISK R+ + DY+ LY +FDS L++S +Y L +++
Sbjct: 1153 ISKFRTLLSS-DYTELYSEFDSIYLNSSTSDYLSLNSILR 1191
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 30.3 bits (65), Expect = 0.70
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 306 DSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDW-ITKNITDGINRRNKLWYK 364
D + +D++ EY ED + + + +L +D + N+ R NK K
Sbjct: 1087 DQTTMDSTFPEYS--EDELSSVDKSELVSNISVLKKKTEDREVDINVLSEYRRCNKEAEK 1144
Query: 365 LKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFNKCSKKPKKMWSLI 415
D +E K +T+ +V D+QS + ++ F S K K+M+ +I
Sbjct: 1145 RDSDYQSELQK---RTDLKKVVTDLQSQRLDEFMYGFGIISMKLKEMYQII 1192
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.9 bits (64), Expect = 0.93
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 308 SKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLWYK 364
+KL+ YE+ + I+ K +++I LP+++ T + +G+ +K YK
Sbjct: 394 TKLEEERYEFDRHIEATSWTIKSLKKIQNRINELPEEERETYTLEEGLGLPSKSIYK 450
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 303 KKFDSSKLDNSNYEYKHLE-DVIKQN--IRE--NTKTKSKIL--NLPQQDWITKNITDGI 355
++ D SK Y + D++K++ + E NTK + IL +L +++ +T + I
Sbjct: 644 REIDMSKFSTLKYNLQLPNVDLLKESEAVSETKNTKNNTFILKSDLKEEERLTNFTIEEI 703
Query: 356 NRRNKLWYKLKKDPNNEDLKANFKTERNQV 385
N+ + L+K D +NF + N V
Sbjct: 704 NKHKAIGVALRKLLEEADTSSNFSSSNNHV 733
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 167 GLHVGVVYKPGSTNTEDFLIDYEQQLHDRNRTIIFGDFNLDLLQEDKQTKMYKQMLC-EN 225
G+ +G+ P S + DFL+ + + + N + F N +++ + TK +++L E
Sbjct: 668 GVTIGITVTPLSGSVVDFLLKHSKTI--ENVSSNFSKKNRNVVVSESLTKSMEEVLTPEK 725
Query: 226 GYKILNKVEEE 236
Y+ L+K+ EE
Sbjct: 726 FYERLSKLLEE 736
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.7 bits (61), Expect = 2.1
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 301 LYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDG-INRRN 359
L+ + S L E L+D++++ + ++ K+ SK+L+ + +++N D N R
Sbjct: 27 LFNRTAESSLLLEPIEQDQLKDLVEEWMHDSNKSDSKLLS----NQVSQNDNDARKNLRK 82
Query: 360 KLWYKLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLD--AFNKCSKKPKKMWSLINT 417
+L + KD E K E + ++ AK K D A + K+ KK +
Sbjct: 83 RLRNDVLKDLAEEIQGCEKKLE--SLYEEVAKAKAKAVEDQLALEEADKEAKKAKTEAPV 140
Query: 418 LATNK-LKKKCLLPKI 432
A NK L+ + P+I
Sbjct: 141 EAANKSLRSRKKTPEI 156
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 28.7 bits (61), Expect = 2.1
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 249 LDHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSS 308
+D+V +LK KNV ++ D K++ A K Q+ S+ +S E S+ Y+ S
Sbjct: 1 MDYVGGSLKLKNVKKKPLKKKKKDSKKL--AEKVQEHSSRDKSPLEENGVST-YQMLRSK 57
Query: 309 KLDNS---NYEYKHLEDVIKQNIRENTKTK 335
D++ KH E V +Q + + K +
Sbjct: 58 DTDSAMPMTEAQKHFESVQEQRLLQKAKNE 87
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 2.8
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 218 YKQMLCENGYKILNKVEEEYCTRETSTTRTIL---DHVTTNLKNKNVHLA--IVESCMSD 272
+K + +N ++ ++E+ S + I V N+ N H A IV++ S
Sbjct: 43 FKTTISQNNEEVKTSLKEDSSKFHPSASAPIFVPTSSVQLNVSKNNGHKASDIVDAVSSK 102
Query: 273 HKQIYVAIKKQQVISKQR------SKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQ 326
+++ K + SK R S+ +A+D S ++S S K
Sbjct: 103 DEELRKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQETSSSKGSVNNKSERSREAKS 162
Query: 327 NIRENTKTKSKILNLPQQDWITKNITDGINR 357
+ +N+K K L+L + D ++ I + NR
Sbjct: 163 RMPKNSKEIKKGLDLSKLDMTSRMIVELKNR 193
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 2.8
Identities = 35/172 (20%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 186 IDYEQQLHDRNRTIIFGDFNLDLLQEDKQTKMYKQMLCENGYKILNKVEEEYCTRETSTT 245
++YEQQL + + ++ + DLL+++++ L EN L+++ +EY ++S+
Sbjct: 60 VNYEQQLRNSEKKLLQSNERYDLLEDERK-------LLENE---LSQI-KEYLREKSSSY 108
Query: 246 RTILDHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKF 305
T+L H ++LK+ N L + + + + Q ++S + + E ++ K
Sbjct: 109 DTVL-HDCSSLKSVNEALK-----QAQDQNLKQTAQLQNLLSDKEKEVE--KKITIIKDL 160
Query: 306 DSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINR 357
+ L +S ++ L+ ++ T + ++ L Q++ I +N ++R
Sbjct: 161 KDA-LASSTHQVLELQHTQQEKASLQTNYEFELQKLTQKNSILENNNTWLSR 211
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 121 THHYSYRNDIRGGGVSIYVHNNIKHSTTEDKYSNGNN 157
TH + R + G +++ N K S T +K+S +N
Sbjct: 25 THSHCPRKQLEGEETCVFIENGQKKSLTLEKWSTSDN 61
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 127 RNDIRGGGVSIYVHNNIKHSTTEDKYSNGNN--YLWVYLEQHGLHVGVVYKPGSTNTEDF 184
++D+RGG S Y + S + +KYS G N Y + G Y + T+D
Sbjct: 92 QSDVRGGDTS-YSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDT 150
Query: 185 LIDYEQQLHDRNRTIIFGDFNLDLLQ 210
+ Q + +T GD+ D Q
Sbjct: 151 ASYGQSQYNQSRKTTQGGDYGEDYSQ 176
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 144 KHSTTEDKYSNGNNYLWVYLEQHGLHVGVVYKPGSTNT 181
K S T N NY +Y + L +G +YK STNT
Sbjct: 134 KWSLTFKLTQNLYNYRILYFIKRNLGIGSLYKESSTNT 171
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 4.9
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 279 AIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKI 338
A+KK++ KQRSK E Y+SLYK++ + + + L++++ ++ +
Sbjct: 323 AMKKRE---KQRSKDE---YASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISRIPMSTVN 376
Query: 339 LNLPQQDWITKNITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTRD 388
L +D I ++ +D + +Y+ K+ + + + + ER + R+
Sbjct: 377 AFLRAEDSIPESFSD-----EQAYYEEKRRKDQLEAEEYYARERRWMNRE 421
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 4.9
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 174 YKPGSTNTEDFLIDYEQQLHDRNRTIIFGDFNLDLLQEDKQTKMYKQMLCENGYKILNKV 233
YK GS N DF+ Y +L D NR LL ++ K Y + ++ ++
Sbjct: 777 YKSGSLNILDFITKYSSRL-DLNRV-------FPLLPKNISMKSYHSLFSSQFRQLFEEL 828
Query: 234 EEEYCTRETSTTR-TILDHVTTNLKNKNVHLAIVESCMSDHKQI 276
+ + R L+ T ++++ V + ++C+ HK++
Sbjct: 829 SNKETQSKLYQKRLEDLNEELTKVRSEKVVITREKTCLFCHKRL 872
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 6.5
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 299 SSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGINRR 358
S L+ + S +D++ +Y +D Q ++E+ + + + D+ K I+ +
Sbjct: 756 SLLHSDNEISPIDSTRKDYFTSKDSNLQTLKEDASSTKQAKDSGTNDF-DKLISGNDVSK 814
Query: 359 NKLWYKLKKDPNNEDLKANFKT-ERNQVTRDIQSAKRKYYLDAFNKCSKKP 408
N + + + + E +T+DI + KRK Y + SK+P
Sbjct: 815 NNSGEEQSRSALKPLISGKLSSCESINLTKDISTVKRKEYFGIESTSSKQP 865
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 55 DYSQIETFYPSLNFLYANVRSIVKPGKFDELKCVLKSIDKGVHVVLLTETWIKSENDAMK 114
+Y+ +E+F LN ++ N ++ PG F V + +K + L+ + I S ++ K
Sbjct: 203 EYTTLESFVKDLNQMFINAKTYNAPGSF-----VYEDAEK---LSQLSSSLISSFSEQPK 254
Query: 115 LHLPNYTHH 123
H P + H
Sbjct: 255 EHSPATSKH 263
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 151 KYSNGNNYLWVYLEQHGLHVGVVYKPGSTNTEDFLIDYEQQLHDRNRTIIFGDF 204
++S+ LW YL Q+ + +G K ST F + RN TIIF F
Sbjct: 248 RFSDQAGKLWTYLAQYYIRIGDYEKARST----FYEGMNNIMTVRNFTIIFDAF 297
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 23 RILTKKLCAGNKQSSTRIGILQIENIS 49
RI+ +KLC NK + T G L+I +IS
Sbjct: 735 RIVHEKLCKPNKSNKTYDGDLRITDIS 761
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 254 TNLKNKNVHLAIVESCMSDHKQIYVAIKKQQV-ISKQRSKYEAIDYSSLYKKFDSSKLDN 312
+NL+NK++ + I + +S H Q ++ + ++ S+Q K E +D + +K L+
Sbjct: 71 SNLRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEE 130
Query: 313 SN 314
S+
Sbjct: 131 SS 132
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,979
Number of Sequences: 5004
Number of extensions: 127635
Number of successful extensions: 495
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 26
length of query: 534
length of database: 2,362,478
effective HSP length: 76
effective length of query: 458
effective length of database: 1,982,174
effective search space: 907835692
effective search space used: 907835692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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