Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001503-TA|BGIBMGA001503-
PA|IPR005135|Endonuclease/exonuclease/phosphatase
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 34 0.33
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 33 0.57
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890... 33 0.75
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 32 1.00
11_04_0468 + 18059024-18059108,18059161-18059253,18059408-180596... 30 4.0
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 30 5.3
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 30 5.3
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 30 5.3
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 30 5.3
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 29 7.0
02_04_0385 + 22514619-22514703,22514756-22514848,22515003-225152... 29 7.0
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 29 9.3
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 29 9.3
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 33.9 bits (74), Expect = 0.33
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 309 KLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLP----QQDWITKNITDGINRRNKLWYK 364
K++N + + ++ E + KQN +E + +++ LP + + +TK +RN+ K
Sbjct: 269 KMENRDLKRQNKE-LSKQN-KELMEQSKELMELPALRKKHEELTKRYESLTKKRNEDLAK 326
Query: 365 LKKDPNNEDLKANFKTERNQVTRDIQSAKRK 395
L+K+ ED + +FK E+ + R+I+ K +
Sbjct: 327 LRKE--KEDQQVDFKKEKEDLEREIRQLKEE 355
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 33.1 bits (72), Expect = 0.57
Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 210 QEDKQTKMYKQMLCENGYKILNKVEEEYCTRETSTTRTILDHVTTNLKNKN--VHLAIVE 267
Q D+ + K+ + + +L+ + + ++ R LD +++ H + +E
Sbjct: 355 QLDRNFRQLKKTVYHSN-SLLSSLSSTWTSKPPLAVRYKLDTNALEMESMEGKSHGSTLE 413
Query: 268 SCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQN 327
++ K++Y +K ++ + + K + S Y+ DS+KLD + L+ +I
Sbjct: 414 RLLAWEKKLYQEVKARESVKIEHEKKLSTLQSLEYRGRDSTKLDKTKASINKLQSLIIVT 473
Query: 328 IRENTKTKSKILNL 341
+ T T S I+ +
Sbjct: 474 SQAATTTSSAIVRV 487
>02_03_0143 +
15685242-15686298,15688167-15688265,15688998-15689072,
15689309-15689364,15689786-15689875
Length = 458
Score = 32.7 bits (71), Expect = 0.75
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 266 VESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNY--EYKHLEDV 323
++ M K + +A+ ++IS+QR+KY ++ S ++ ++ + +Y H+ D+
Sbjct: 58 LDKLMIQLKNLRLALDLHELISQQRNKYASLQLLSRWRHEVGLNIEIGAFLKKYPHIFDI 117
Query: 324 IKQNIREN--TKTKSKILNL-PQQDWITKNITDGINRRNKLWYKLKKD 368
I+ N K K+ L Q+D + I +R K L KD
Sbjct: 118 YVHPIKRNECCKVTPKMSELIAQEDAAIRENEPAIAKRLKKLLTLSKD 165
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 32.3 bits (70), Expect = 1.00
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 202 GDFNLDLLQEDKQTKMYK-QMLCENGYKILNKVEEEYCTRETSTTRTILDHVTTNLKNKN 260
GD L L +++ +Y Q CE I+ ++ T T+ + I + + LK KN
Sbjct: 239 GDNQLSSLAAEQE--LYNLQKECEEKDAIIKELAATAHTSSTADAKRIAE-LQEILKRKN 295
Query: 261 VHLAIVESCMSDHKQIYVAIKKQQV-----ISKQRSKYEAIDYSSLYKKFDSSKLDNSNY 315
+ ++ ++ MS KQ+ V + + + +S S+ + + LY +S + +
Sbjct: 296 MVISKLKKDMSALKQMVVELTRAKRTSSVNLSTSCSELPVMSSNVLYDMSSTSPSSSDSE 355
Query: 316 E----YKHLEDVIK--QNIRENTKTK-SKILNLPQQDWITKNITDGINRRNKLWYKLKKD 368
++L+D +K I +++ K S ++ + TKN + G R + + D
Sbjct: 356 SPVAPREYLDDHLKVDDGIAGDSEYKGSSRFSMESACFPTKNSSAGKLRSTSPLKENRID 415
Query: 369 PNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFNKCSKK 407
PN E + +R D + +R+ D+ N+ +K+
Sbjct: 416 PNVETSLVGRQKQRISTNGDFKRTRRQSQQDSRNRATKR 454
>11_04_0468 +
18059024-18059108,18059161-18059253,18059408-18059661,
18059783-18059995,18060081-18060173,18060617-18060721,
18060806-18061150
Length = 395
Score = 30.3 bits (65), Expect = 4.0
Identities = 20/106 (18%), Positives = 42/106 (39%)
Query: 236 EYCTRETSTTRTILDHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEA 295
E C + + H TT + VH+ ++ +D + + K+ SK++ Y
Sbjct: 216 EMCQKNKENRGNVKYHHTTGSRAYMVHVENLDDKYNDEEPNAFDLFKEFHYSKKKKCYTP 275
Query: 296 IDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNL 341
+ ++ + + E K + V+ + ENTK + N+
Sbjct: 276 VVQEAITRMENKLSTTTEGEELKSVAQVVADVLAENTKKNRFLKNV 321
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 29.9 bits (64), Expect = 5.3
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 306 DSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQDWITKNITDGI 355
D+ K D+S +K +E +K+NIR KS ++ + Q W TD +
Sbjct: 1139 DNHKPDSSGSIHKKVEMFVKENIR--PLCKSGVITVEQYRWAVAKTTDKV 1186
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 29.9 bits (64), Expect = 5.3
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 303 KKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLP-QQDWITKNITDGINRRNKL 361
+KFD+SK + Y H IKQ +R++ +S+I LP + + + I R +
Sbjct: 365 EKFDASKGFRFS-TYSHWW--IKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRR- 420
Query: 362 WYKLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDA 400
KLK+ P NE++ A+ +V + K LD+
Sbjct: 421 --KLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDS 457
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 29.9 bits (64), Expect = 5.3
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 268 SCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQN 327
S + DHKQI +A +K +IS+ ++ +A SS ++ +++ Y E+ I Q+
Sbjct: 637 SSIRDHKQIVLANQKNNIISRSHNETQA---SSEIDSIGTNDNASTSSVYDLPEESIHQS 693
Query: 328 IRENTKTKS 336
+ +T+ S
Sbjct: 694 AKNSTENTS 702
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.9 bits (64), Expect = 5.3
Identities = 46/238 (19%), Positives = 100/238 (42%), Gaps = 18/238 (7%)
Query: 234 EEEYCTRETSTTRTILDHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKK-----QQVISK 288
E E E L + L +A + ++ H+ +IK+ + ++
Sbjct: 812 ERERLIMEKDAVANELAMLEEQLTTSKAQIAAMTETLNRHQTKVASIKQDYDQAESELNI 871
Query: 289 QRSKYEAID--YSSLYKKFDS--SKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNLPQQ 344
RSK + D +S+ K+ +L +SN E K +E+ +K+ E SK+ L ++
Sbjct: 872 GRSKLKECDSQINSMAKEQQKLQQQLSDSNVERKKMENEVKRMEIEQKDCSSKVDKLVEK 931
Query: 345 -DWI-TKNITDGINRRNKLWYKLKKDPNNEDLKANFKTERNQVTRDIQSAKRKYYLDAFN 402
WI T+ G + + + + E+L+ N + +++ + + + K + F
Sbjct: 932 YSWIATEKQLFGKSGTDYDFVSCEPHKAREELE-NLQAQQSSLEKRV----NKKVMAMFE 986
Query: 403 KCSKKPKKMWSLINTLATNKLKKKCLLPKIHSTEGRIIQEDHICEYFNKFFSTVGTTL 460
K + + S N + +K K K ++ ++ + ++ + NK F ++ +TL
Sbjct: 987 KAEDEYNDLMSKKNIIENDKSKIKTVIEELDEKKKETLKVTWL--KVNKDFGSIFSTL 1042
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 29.5 bits (63), Expect = 7.0
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 257 KNKNVHL-AIVESCMSDHKQIYVAIKKQQVISKQRSKYEAIDYSSLYKKFDSSKLDNSNY 315
K +VHL A++ + +S H + +V+ + R E DY ++ + Y
Sbjct: 719 KYSHVHLIALLTAGLSRHHDDFAVSVVDEVLEETRVGLELNDYGMQQRRLAHMRFLGELY 778
Query: 316 EYKHLEDVI 324
YKH++ +
Sbjct: 779 SYKHIDSSV 787
>02_04_0385 +
22514619-22514703,22514756-22514848,22515003-22515256,
22515378-22515590,22515676-22515768,22516213-22516317,
22516402-22516710,22517648-22517717,22518008-22518102,
22519143-22519361
Length = 511
Score = 29.5 bits (63), Expect = 7.0
Identities = 20/106 (18%), Positives = 41/106 (38%)
Query: 236 EYCTRETSTTRTILDHVTTNLKNKNVHLAIVESCMSDHKQIYVAIKKQQVISKQRSKYEA 295
E C + + H TT + VH+ ++ +D + + K+ SK++ Y
Sbjct: 216 EMCQKNKENRGNVKYHHTTGSRAYMVHVENLDDKYNDEEPNAFDLFKEFHYSKKKKCYTP 275
Query: 296 IDYSSLYKKFDSSKLDNSNYEYKHLEDVIKQNIRENTKTKSKILNL 341
+ ++ + + E K V+ + ENTK + N+
Sbjct: 276 VVQEAITRMENKLSTTTEGEELKSAAQVVADVLAENTKKNRFLKNV 321
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 29.1 bits (62), Expect = 9.3
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 415 INTLATNKLKKKCLLPKI--HSTEGRIIQEDHICEYFNKFFSTVGTTLADKIPQKFHGNH 472
I L T ++ K+C +P + H+TE I H + + + + DK KF G+H
Sbjct: 210 IMELDTIQVAKRCFVPALFGHATEDDFILPHHSDKIYESY-------VGDKNIIKFDGDH 262
Query: 473 THILPNNSVTNVVLQNLNLCTPDEIEKHIDNLDPNTSTG 511
P ++ + N+ P ++ L P+ S G
Sbjct: 263 NSPRPQFYFDSITIFFHNVLNPPDVPDDHYFLTPHGSLG 301
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 29.1 bits (62), Expect = 9.3
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 266 VESCMSDHKQIYVAIKKQQVIS-KQRSKYEAIDYSSLYKKFDSSKLDNSNYEYKHLEDVI 324
+E + K++Y IK ++ + KY + S + DS+ +D + ++L+ I
Sbjct: 486 LEKLCAWEKKLYQEIKDEEKLRILYEKKYRRLK-SLDERGLDSTTIDATRLSVRNLQSRI 544
Query: 325 KQNIRENTKTKSKILNLPQQDWITKNITDGINRRNKLW 362
NIR SKI N+ ++ + + D I ++W
Sbjct: 545 TINIRTANAFSSKIQNIRDEE-LYPQLVDLIIGLRRMW 581
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,796
Number of Sequences: 37544
Number of extensions: 637180
Number of successful extensions: 1572
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 13
length of query: 534
length of database: 14,793,348
effective HSP length: 85
effective length of query: 449
effective length of database: 11,602,108
effective search space: 5209346492
effective search space used: 5209346492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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