GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
         (268 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.3  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 107 IKSIGYDYGIAQCPELESHGG 127
           + S GY YG    P+L SH G
Sbjct: 74  VLSNGYGYGNYYHPQLHSHHG 94


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 107 IKSIGYDYGIAQCPELESHGG 127
           + S GY YG    P+L SH G
Sbjct: 74  VLSNGYGYGNYYHPQLHSHHG 94


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 107 IKSIGYDYGIAQCPELESHGG 127
           + S GY YG    P+L SH G
Sbjct: 74  VLSNGYGYGNYYHPQLHSHHG 94


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 107 IKSIGYDYGIAQCPELESHGG 127
           + S GY YG    P+L SH G
Sbjct: 74  VLSNGYGYGNYYHPQLHSHHG 94


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 156 WLVYRQIDGFQGRPNKPVDTC 176
           W +YR   G   + + PVD C
Sbjct: 31  WAIYRPGIGRYAQEDLPVDLC 51


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,799
Number of Sequences: 317
Number of extensions: 2076
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 114,650
effective HSP length: 56
effective length of query: 212
effective length of database: 96,898
effective search space: 20542376
effective search space used: 20542376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)