GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...   103   2e-23
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    85   1e-17
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    84   2e-17
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    25   8.6  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score =  103 bits (248), Expect = 2e-23
 Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 19/218 (8%)

Query: 28  LAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNF-SATLSGC-ESDMRFVYCAA 85
           LA T   +C LL LGD+LSRI+R  +   V+  +T +G+F S  +  C + DMR +Y A 
Sbjct: 97  LAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMAT 156

Query: 86  CISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXX-------- 137
            I+ +L D+S  D   +  Y+     Y+ G +  P  E+H G                  
Sbjct: 157 TIASLL-DFSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPN 215

Query: 138 ----XXDQLDKLSEA--QIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILN 189
                 +Q   L +   +++ L RWL  RQ+   G  GR NK VDTCY++WV +SLK+L+
Sbjct: 216 SSLNTSNQSYNLMDCVPKVERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLD 275

Query: 190 ALQLTNYGSNRRYVYETQDMVVGGFSKWPDTCTDPMHT 227
           AL   + G   +Y+       +GGFSK P    D +H+
Sbjct: 276 ALPFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVLHS 313


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 27  HLAMTYTG-LCILLALGDDL-SRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCA 84
           HL  TY   L I L    D  S I R  L   + +L+  +G+F     G ESD R VY A
Sbjct: 104 HLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEG-ESDARSVYAA 162

Query: 85  ACISYILNDWSGFDIEKAT-DYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLD 143
            C+S ++       + + T  ++ K   Y+ G++  P  E+HGG              LD
Sbjct: 163 VCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLD 222

Query: 144 KLSEAQIDGLKRWLVYRQ---IDGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGS 198
            L+E +   L  WLV RQ   + GF GR NK VD CYS+WVGAS    + +  + YGS
Sbjct: 223 NLNEIK---LSTWLVQRQDPALYGFSGRSNKLVDGCYSWWVGAS----HVIVASGYGS 273



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 145 LSEAQIDGLKRWLVYRQI--DGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRY 202
           + +   +G  +WL   Q    G  G P       Y+F   A++ +L  L   N      +
Sbjct: 173 MDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTW 232

Query: 203 VYETQDMVVGGFSKWPDTCTDPMHTY 228
           + + QD  + GFS   +   D  +++
Sbjct: 233 LVQRQDPALYGFSGRSNKLVDGCYSW 258


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 38  LLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAACISYILNDWSGF 97
           +LA+ D L  +++  +   +  LQ ++G+      G E D RF+Y       IL      
Sbjct: 90  VLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGDRWG-EIDARFLYSGINCLAILGKLDYL 148

Query: 98  DIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLSEAQIDGLKRWL 157
           +   A D+++K   +D G   CP  ESHG             ++LD + E   + L  W+
Sbjct: 149 NKNTAVDWLMKCYNFDGGFGLCPGAESHGAMVFTCVAALKILNKLDLIDE---ELLGWWI 205

Query: 158 VYRQIDG--FQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVYETQDMVVGGFS 215
             RQ+ G    GRP K  D+CY +W  + L I+  L   +      ++  TQD   GGF+
Sbjct: 206 SERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFA 265

Query: 216 KWPDTCTDPMHT 227
              +  TD  HT
Sbjct: 266 DRKEDATDVYHT 277


>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 37  ILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGC 74
           I + +  DLSR+    L   +KA++  + N  ATL+ C
Sbjct: 125 IRIRIVGDLSRLQPDVLETALKAVEITKHNTKATLNVC 162


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,260
Number of Sequences: 5004
Number of extensions: 39784
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 6
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)