GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
         (268 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0336 + 2712412-2712576,2713663-2713738,2713840-2713898,271...   100   2e-21
08_02_1226 + 25394106-25394168,25394243-25394396,25394548-253946...    85   6e-17
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    38   0.006
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903...    28   9.0  

>01_01_0336 +
           2712412-2712576,2713663-2713738,2713840-2713898,
           2714009-2714148,2714690-2714745,2714832-2714908,
           2715007-2715075
          Length = 213

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 5   GFQGSSTINIRLDPDNNQFRCG-HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTD 63
           GF GS T         +    G HLA TY+ L IL  +G DL+ I+   L+  ++ LQ  
Sbjct: 85  GFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQP 144

Query: 64  EGNFSATLSGCESDMRFVYCAACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELE 123
           +G+F  T  G E+D+RFVYCAA I  +L DW+G D EKA  Y++    YD G    P  E
Sbjct: 145 DGSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSE 204

Query: 124 SHG 126
           SHG
Sbjct: 205 SHG 207


>08_02_1226 +
           25394106-25394168,25394243-25394396,25394548-25394664,
           25395541-25395607,25395701-25395828,25396327-25396460,
           25396552-25396650,25396780-25396902
          Length = 294

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 27  HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
           H+  T + + +L  L D L  ++   +   +  LQ ++G+FS  + G E D RF Y A C
Sbjct: 84  HVLYTLSAVQVL-CLFDRLDALDVDKVADYIAGLQNEDGSFSGDIWG-EVDTRFSYIAIC 141

Query: 87  ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
              +L+     +++KA DY++     D G    P +    G              +D+  
Sbjct: 142 TLSLLHRLEKINVQKAVDYIVSCKNLDGGFGAMPGVFCCVGALAITGSLH----HIDR-- 195

Query: 147 EAQIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVY 204
               D L  WL  RQ    G  GRP K  D CYS+WV +SL +++ +   +     +++ 
Sbjct: 196 ----DLLGWWLCERQCKEGGLNGRPEKLADVCYSWWVLSSLIMIDRVHWIDKDKLAKFIL 251

Query: 205 ETQDMVVGGFSKWPDTCTDPMHTY 228
             QD   GG S  PD   D  HTY
Sbjct: 252 NCQDKENGGISDRPDNAVDIYHTY 275


>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 22/78 (28%), Positives = 37/78 (47%)

Query: 73  GCESDMRFVYCAACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXX 132
           G E D+R  Y A  ++ ++N   G   +   +Y+ +   Y+ GIA  P  E+HGG     
Sbjct: 225 GGEIDVRASYTAISVASLVNILDGELAKGVGNYITRCQTYEGGIAGEPYAEAHGGYTFCG 284

Query: 133 XXXXXXXDQLDKLSEAQI 150
                  +++DKL  A +
Sbjct: 285 LATMILLNEVDKLDLASL 302


>12_02_0760 -
           22888636-22889407,22889503-22889769,22890001-22890302,
           22890402-22890512,22890990-22891568,22892026-22892087,
           22892434-22892754,22893434-22893776
          Length = 918

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 178 SFWVGASLKILNALQLTNYGSNRRYVYETQDMVVGGFSKWPD 219
           SF + +SL  + A+Q+ N  S+  Y+ +    + GG  +W D
Sbjct: 140 SFSIPSSLDAVGAVQVVNRYSSEVYISDIDVHLCGGRHQWTD 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,328,237
Number of Sequences: 37544
Number of extensions: 252896
Number of successful extensions: 381
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 4
length of query: 268
length of database: 14,793,348
effective HSP length: 81
effective length of query: 187
effective length of database: 11,752,284
effective search space: 2197677108
effective search space used: 2197677108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)