GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
         (268 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)             183   2e-46
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 75   5e-14
SB_18098| Best HMM Match : Prenyltrans (HMM E-Value=0.11)              73   3e-13
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       40   0.002
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               31   1.3  
SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34)            29   5.3  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score =  183 bits (445), Expect = 2e-46
 Identities = 94/187 (50%), Positives = 123/187 (65%), Gaps = 25/187 (13%)

Query: 4   CGFQGSSTINIRL-DPDN-NQFRCGHLAMTYTGLCILLALGDDLSRINRTALIQGVKALQ 61
           CGF+GSST    L DP++ +++  GH+AMTYT L +LL LGDDLSRINR A+I+G++ LQ
Sbjct: 72  CGFRGSSTAGCNLKDPESVHEYEYGHIAMTYTALAMLLILGDDLSRINRPAIIEGLRHLQ 131

Query: 62  TDEGNFSATLSGCESDMRFVYCAACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPE 121
            ++G+F                      ILNDWSG +IEKA  Y+  S  YDYGIAQ P 
Sbjct: 132 LEDGSF----------------------ILNDWSGINIEKAVQYIRNSQSYDYGIAQGPH 169

Query: 122 LESHGGXXXXXXXXXXXXDQLDKL-SEAQIDGLKRWLVYRQIDGFQGRPNKPVDTCYSFW 180
           LESHGG            +QLDK+ +++Q++ L RW ++RQ  GF GRPNKPVDTCY+FW
Sbjct: 170 LESHGGSTFCAIASLSLMNQLDKVFTKSQLEKLIRWCIFRQKSGFHGRPNKPVDTCYAFW 229

Query: 181 VGASLKI 187
           VGASL++
Sbjct: 230 VGASLEV 236


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 27  HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
           HLA TY    ++L   +  + I+R AL   +   +  +G F   + G E D+R  YCAA 
Sbjct: 129 HLAPTYAA--VILGTEEAYNVIDRPALYNFIMRCRNLDGGFRMHVDG-EVDIRGAYCAAV 185

Query: 87  ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
            + I N  +        D++     Y+ G +  P LE+HGG              L K  
Sbjct: 186 SASITNILTPELFAGTADWLKSCQTYEGGFSGEPGLEAHGGYTFCGFACLVL---LGKEH 242

Query: 147 EAQIDGLKRWLVYRQID---GFQGRPNKPVDTCYSFWVGASLKILNAL 191
              +  L RW V RQ+    GFQGR NK VD CYS+W+G    +L+++
Sbjct: 243 IVNLKQLLRWAVNRQMKAEGGFQGRTNKLVDGCYSYWLGGLFPLLHSV 290


>SB_18098| Best HMM Match : Prenyltrans (HMM E-Value=0.11)
          Length = 62

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/48 (62%), Positives = 41/48 (85%), Gaps = 1/48 (2%)

Query: 140 DQLDKL-SEAQIDGLKRWLVYRQIDGFQGRPNKPVDTCYSFWVGASLK 186
           +QLDK+ +++Q++ L RW ++RQ  GF GRPNKPVDTCY+FWVGASL+
Sbjct: 15  NQLDKVFTKSQLEKLIRWCIFRQKSGFHGRPNKPVDTCYAFWVGASLE 62


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 27/151 (17%)

Query: 32   YTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAACI-SYI 90
            Y GL  + AL D L  +NR   I  VK+ Q D+G F A++S    D   +Y  + + S  
Sbjct: 860  YWGLTAM-ALMDKLDMMNREEAIDFVKSCQHDDGGFGASVS---HDPHLLYTLSAVQSLC 915

Query: 91   LNDW-------------------SGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXX 131
            +  W                      +++KA +YV+  + +D G    P  ESH G    
Sbjct: 916  MLQWLTLPTLQIVIICSLPKDRLDAINVDKAVEYVVDCMNFDGGFGCRPGSESHAGQIYC 975

Query: 132  XXXXXXXXDQLDKLSEAQIDGLKRWLVYRQI 162
                      L  ++   +D L  WL  RQ+
Sbjct: 976  CLGALSITHSLHHVN---VDMLGWWLCERQL 1003


>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 18  PDNNQFRCGHLAMTYTGLCILLALGDDLSRINRTA 52
           P+NN++R  H+   Y  L +LL  G+ L ++ R A
Sbjct: 318 PENNKWRQAHMQARYVILRVLLEAGEQLVQLTRIA 352


>SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34)
          Length = 723

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 53  LIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
           ++ G+ +L TD+  F+ T +GC S ++ VY +AC
Sbjct: 636 VVSGIHSL-TDKSVFALT-NGCASTLKVVYASAC 667


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 74  CESDMRFVYCAACISYILNDWSGFD 98
           C+   R + C AC  ++L  WS F+
Sbjct: 248 CDDLGRALVCVACFHHLLRQWSSFE 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,454,707
Number of Sequences: 59808
Number of extensions: 300327
Number of successful extensions: 423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 11
length of query: 268
length of database: 16,821,457
effective HSP length: 81
effective length of query: 187
effective length of database: 11,977,009
effective search space: 2239700683
effective search space used: 2239700683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)