GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
         (268 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical pr...   167   5e-42
U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical p...   118   4e-27
U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical p...   106   1e-23
Z77659-7|CAB01167.1|  401|Caenorhabditis elegans Hypothetical pr...    85   5e-17

>Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical
           protein Y48E1B.3 protein.
          Length = 360

 Score =  167 bits (407), Expect = 5e-42
 Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 13/265 (4%)

Query: 2   SLCGFQGSSTINIRLDPDNNQFRCGHLAMTYTGLCILLALGDDLSRINRTALIQGVKALQ 61
           ++CGF+GS +       +N+ +   +LA TY+ L  L  LGDDL +++R A+++ VK  Q
Sbjct: 96  NVCGFRGSHSC------ENSGYDEANLAQTYSALLSLAILGDDLKKVDRKAILKTVKTAQ 149

Query: 62  TDEGNFSATLSGCESDMRFVYCAACISYILND--WSGFDIEKATDYVIKSIGYDYGIAQC 119
            D G F +   G ESDMRFV+CA  IS+IL+       D  K   ++ +S+  D GI Q 
Sbjct: 150 RDNGCFWSQGVGSESDMRFVFCAVAISHILDGDKEQTIDWTKLAGFLRQSLNIDGGIGQA 209

Query: 120 PELESHGGXXXXXXXXXXXXDQL---DKLSEAQIDGLKRWLVYRQIDGFQGRPNKPVDTC 176
           P  ESHGG            ++L   + L+   ID L RW + +Q  GF GR +KP D+C
Sbjct: 210 PGDESHGGSTFCAIASLALSNRLWTEEVLTRRDIDRLIRWAIQKQDIGFHGRAHKPDDSC 269

Query: 177 YSFWVGASLKILNALQLTNYGSNRRYVYETQDMVVGGFSKWPDT--CTDPMHTYXXXXXX 234
           Y+FW+GA+LKILNA  L +    R ++   Q   +GGF K+P+    +D +HTY      
Sbjct: 270 YAFWIGATLKILNAYHLVSKQHLREFLMICQHPHIGGFCKYPEPGGYSDILHTYFSIAAL 329

Query: 235 XXXXXXXXXXXXPRLNITKRAYEHL 259
                       P LN++ R  E +
Sbjct: 330 SLLGEPAVNPVHPSLNVSMRVAERI 354


>U10438-11|AAL50321.1|  335|Caenorhabditis elegans Hypothetical
           protein B0280.1a protein.
          Length = 335

 Score =  118 bits (284), Expect = 4e-27
 Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 8/233 (3%)

Query: 26  GHLAMTYTGLCIL--LALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYC 83
           GH +     LC +  L + + + + +   + + VK LQ ++G+F   LSG E D RF  C
Sbjct: 96  GHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSG-EVDTRFTLC 154

Query: 84  AACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLD 143
           +    ++L   S  +I+ A  ++++    D G    P  ESH G             +LD
Sbjct: 155 SLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLD 214

Query: 144 KLSEAQIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRR 201
           ++     D    WL +RQ D  G  GRP K  D CYS+WV ASL IL  L   +  + ++
Sbjct: 215 EIDR---DRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKK 271

Query: 202 YVYETQDMVVGGFSKWPDTCTDPMHTYXXXXXXXXXXXXXXXXXXPRLNITKR 254
           ++Y  QD   GGF+  P  C DP HT                   P   +TKR
Sbjct: 272 FIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFGDDTLESVDPIFCMTKR 324


>U10438-12|ABB88244.1|  325|Caenorhabditis elegans Hypothetical
           protein B0280.1b protein.
          Length = 325

 Score =  106 bits (255), Expect = 1e-23
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 26  GHLAMTYTGLCIL--LALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYC 83
           GH +     LC +  L + + + + +   + + VK LQ ++G+F   LSG E D RF  C
Sbjct: 96  GHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSG-EVDTRFTLC 154

Query: 84  AACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLD 143
           +    ++L   S  +I+ A  ++++    D G    P  ESH G             +LD
Sbjct: 155 SLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLD 214

Query: 144 KLSEAQIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRR 201
           ++     D    WL +RQ D  G  GRP K  D CYS+WV ASL IL  L   +  + ++
Sbjct: 215 EIDR---DRTAEWLAFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSDAMKK 271

Query: 202 YVYETQDMVVGGFSKWPDTC 221
           ++Y  QD   GGF+  P  C
Sbjct: 272 FIYACQDDETGGFADRPGDC 291


>Z77659-7|CAB01167.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.6 protein.
          Length = 401

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 67/216 (31%), Positives = 92/216 (42%), Gaps = 19/216 (8%)

Query: 27  HLAMTYTGLCILLALGDD--LSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCA 84
           HLA TY  +  L++L  +  L  INR  L   +K  + + G F     G E DMR  YCA
Sbjct: 137 HLAPTYAAVMCLVSLQKEEALRSINRVTLFNFLKKCKHESGGFYMHEGG-EIDMRSAYCA 195

Query: 85  ACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDK 144
                I+            +++I    ++ G    P  E+HGG              L++
Sbjct: 196 LATCEIVGLPMDEISNGVAEWIISCQSFEGGFGGEPYTEAHGGYTFCAVASLVL---LNR 252

Query: 145 LSEAQIDGLKRWLVYRQI---DGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRR 201
              A ++GL RW   RQ+    GFQGR NK VD CYSFW GA   +L+        S  +
Sbjct: 253 FRLADMEGLLRWATRRQMRFEGGFQGRTNKLVDGCYSFWQGAIFPLLDGEMEREGRSLEK 312

Query: 202 YVYETQ----------DMVVGGFSKWPDTCTDPMHT 227
            ++E +            V GGF   PD   D  HT
Sbjct: 313 GLFEARMLEEYILVGCQSVHGGFKDKPDKPVDLYHT 348



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 151 DGLKRWLVYRQI--DGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVYETQD 208
           +G+  W++  Q    GF G P       Y+F   ASL +LN  +L +     R+    Q 
Sbjct: 211 NGVAEWIISCQSFEGGFGGEPYTEAHGGYTFCAVASLVLLNRFRLADMEGLLRWATRRQM 270

Query: 209 MVVGGFSKWPDTCTDPMHTY 228
              GGF    +   D  +++
Sbjct: 271 RFEGGFQGRTNKLVDGCYSF 290


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,190,324
Number of Sequences: 27539
Number of extensions: 218462
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 6
length of query: 268
length of database: 12,573,161
effective HSP length: 80
effective length of query: 188
effective length of database: 10,370,041
effective search space: 1949567708
effective search space used: 1949567708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)