Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001502-TA|BGIBMGA001502-PA|IPR008930|Terpenoid
cylases/protein prenyltransferase alpha-alpha toroid,
IPR001330|Prenyltransferase/squalene oxidase
(268 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ... 156 1e-38
At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta... 99 2e-21
At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta... 99 2e-21
At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta... 98 5e-21
At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta... 98 5e-21
At5g40280.1 68418.m04886 protein farnesyltransferase beta subuni... 93 1e-19
At2g48110.1 68415.m06022 expressed protein 28 7.5
At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family pr... 27 10.0
At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr... 27 10.0
>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
subunit (GGT-IB) nearly identical to GI:11878247
Length = 375
Score = 156 bits (379), Expect = 1e-38
Identities = 92/235 (39%), Positives = 124/235 (52%), Gaps = 12/235 (5%)
Query: 5 GFQGSSTINIRLDPDNNQFRCG-HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTD 63
GF GS + +D + + G HLA TY L IL +G DLS I+ +L+ + LQ D
Sbjct: 111 GFFGSRSSQFPIDENGDLKHNGSHLASTYCALAILKVIGHDLSTIDSKSLLISMINLQQD 170
Query: 64 EGNFSATLSGCESDMRFVYCAACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELE 123
+G+F G E+D+RFVYCAA I Y+L+ WSG D E A +Y++ YD G P E
Sbjct: 171 DGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNYILNCQSYDGGFGLIPGSE 230
Query: 124 SHGGXXXXXXXX-----XXXXDQLDKLSEAQI---DGLKRWLVYRQID--GFQGRPNKPV 173
SHGG D L S + I L W + RQ + GFQGR NKP
Sbjct: 231 SHGGATYCAIASLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPS 290
Query: 174 DTCYSFWVGASLKILNALQLTNYGSNRRYVYETQDMVVGGFSKWPDTCTDPMHTY 228
DTCY+FW+GA LK++ L + + R+++ Q GGFSK+P D H+Y
Sbjct: 291 DTCYAFWIGAVLKLIGGDALIDKMALRKFLMSCQSK-YGGFSKFPGQLPDLYHSY 344
>At5g12210.2 68418.m01433 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 320
Score = 99 bits (238), Expect = 2e-21
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%)
Query: 27 HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
H+ T + + IL AL D ++ ++ + V LQ ++G+FS + G E D RF Y A C
Sbjct: 87 HILYTLSAVQIL-ALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWG-EIDTRFSYIAIC 144
Query: 87 ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
IL ++EKA Y++ D G P ESH G L +
Sbjct: 145 CLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVD 204
Query: 147 EAQIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVY 204
+ D L WL RQ+ G GRP K D CYS+WV +SL +++ + + +++
Sbjct: 205 K---DSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDRVHWIDKAKLVKFIL 261
Query: 205 ETQDMVVGGFSKWPDTCTDPMHTY 228
+ QD+ GG S P+ D HTY
Sbjct: 262 DCQDLDNGGISDRPEDAVDIFHTY 285
>At5g12210.1 68418.m01432 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to rab geranylgeranyl
transferase GB:CAA69383 GI:1552549 from [Homo sapiens]
Length = 321
Score = 99 bits (238), Expect = 2e-21
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 7/204 (3%)
Query: 27 HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
H+ T + + IL AL D ++ ++ + V LQ ++G+FS + G E D RF Y A C
Sbjct: 88 HILYTLSAVQIL-ALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWG-EIDTRFSYIAIC 145
Query: 87 ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
IL ++EKA Y++ D G P ESH G L +
Sbjct: 146 CLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVD 205
Query: 147 EAQIDGLKRWLVYRQID--GFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYVY 204
+ D L WL RQ+ G GRP K D CYS+WV +SL +++ + + +++
Sbjct: 206 K---DSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDRVHWIDKAKLVKFIL 262
Query: 205 ETQDMVVGGFSKWPDTCTDPMHTY 228
+ QD+ GG S P+ D HTY
Sbjct: 263 DCQDLDNGGISDRPEDAVDIFHTY 286
>At3g12070.2 68416.m01503 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 98.3 bits (234), Expect = 5e-21
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 8/205 (3%)
Query: 27 HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
H+ T + + IL AL D L+ ++ + + LQ ++G+FS + G E D RF Y A C
Sbjct: 83 HVLYTLSAVQIL-ALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWG-EVDTRFSYIAIC 140
Query: 87 ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
IL +++KA DY++ D G P ESH G L ++
Sbjct: 141 CLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVD 200
Query: 147 EAQIDGLKRWLVYRQ---IDGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYV 203
+ D L WL RQ G GRP K D CYS+WV +SL +++ + +++
Sbjct: 201 K---DLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFI 257
Query: 204 YETQDMVVGGFSKWPDTCTDPMHTY 228
++QDM GG S P D HTY
Sbjct: 258 LDSQDMDNGGISDRPSYTVDIFHTY 282
>At3g12070.1 68416.m01502 geranylgeranyl transferase type II beta
subunit, putative / RAB geranylgeranyltransferase beta
subunit, putative similar to geranylgeranyl transferase
type II beta subunit SP:P53611 [GI:1552549] [Homo
sapiens]
Length = 317
Score = 98.3 bits (234), Expect = 5e-21
Identities = 65/205 (31%), Positives = 96/205 (46%), Gaps = 8/205 (3%)
Query: 27 HLAMTYTGLCILLALGDDLSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCAAC 86
H+ T + + IL AL D L+ ++ + + LQ ++G+FS + G E D RF Y A C
Sbjct: 83 HVLYTLSAVQIL-ALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWG-EVDTRFSYIAIC 140
Query: 87 ISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDKLS 146
IL +++KA DY++ D G P ESH G L ++
Sbjct: 141 CLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQIFCCVGALAITGNLHRVD 200
Query: 147 EAQIDGLKRWLVYRQ---IDGFQGRPNKPVDTCYSFWVGASLKILNALQLTNYGSNRRYV 203
+ D L WL RQ G GRP K D CYS+WV +SL +++ + +++
Sbjct: 201 K---DLLGWWLCERQDYESGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWIEKAKLVKFI 257
Query: 204 YETQDMVVGGFSKWPDTCTDPMHTY 228
++QDM GG S P D HTY
Sbjct: 258 LDSQDMDNGGISDRPSYTVDIFHTY 282
>At5g40280.1 68418.m04886 protein farnesyltransferase beta subunit
(ERA1) identical to GI:8347240 [SWISS-PROT:Q38920];
WIGGUM mutant
Length = 482
Score = 93.5 bits (222), Expect = 1e-19
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 27 HLAMTYTGLCILLALGDD--LSRINRTALIQGVKALQTDEGNFSATLSGCESDMRFVYCA 84
HLA TY + L+ LG D LS INR + ++ ++ G F G E D+R Y A
Sbjct: 157 HLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMG-EMDVRACYTA 215
Query: 85 ACISYILNDWSGFDIEKATDYVIKSIGYDYGIAQCPELESHGGXXXXXXXXXXXXDQLDK 144
++ ILN + DY++ Y+ GI P E+HGG +++D+
Sbjct: 216 ISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDR 275
Query: 145 LSEAQIDGLKRWLVYRQ-ID-GFQGRPNKPVDTCYSFWVGASLKILNALQLTN 195
L+ +D L W V+RQ ++ GFQGR NK VD CY+FW A +L L TN
Sbjct: 276 LN---LDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTN 325
>At2g48110.1 68415.m06022 expressed protein
Length = 1295
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 66 NFSATLSGCESDMRFVYCAACISYILNDWSGF 97
+ S + SGC +MR + ACIS L D S +
Sbjct: 460 SMSESASGCSGNMRHLIVEACISRNLLDTSAY 491
>At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 241
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 46 SRINRTALIQGVKALQTDEGNFSATLSGCESD 77
+R++ T ++ + +LQT++ +F LSG E D
Sbjct: 159 TRLSETEVMVQISSLQTEKCSFGNVLSGVEED 190
>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 242
Score = 27.5 bits (58), Expect = 10.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 46 SRINRTALIQGVKALQTDEGNFSATLSGCESD 77
+R++ T ++ + +LQT++ +F LSG E D
Sbjct: 160 TRLSETEVMVQISSLQTEKCSFGNVLSGVEED 191
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.441
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,976,087
Number of Sequences: 28952
Number of extensions: 210031
Number of successful extensions: 361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 12,070,560
effective HSP length: 80
effective length of query: 188
effective length of database: 9,754,400
effective search space: 1833827200
effective search space used: 1833827200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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