Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein
S6e
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   287   8e-79
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   287   1e-78

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  287 bits (705), Expect = 8e-79
 Identities = 141/230 (61%), Positives = 171/230 (74%), Gaps = 4/230 (1%)

Query: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 179
           IPGLTD TVP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 180 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQ 229
           IQRLVTP  LQ                    AE+A+L+A+R  E+K +R+
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  287 bits (703), Expect = 1e-78
 Identities = 141/230 (61%), Positives = 171/230 (74%), Gaps = 4/230 (1%)

Query: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 61  FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 179
           IPGLTD TVP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 180 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQ 229
           IQRLVTP  LQ                    AE+A+L+A+R  E+K +++
Sbjct: 178 IQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,161
Number of Sequences: 5004
Number of extensions: 33721
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)