BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein S6e (253 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 259 1e-69 At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 259 1e-69 At5g02270.1 68418.m00150 ABC transporter family protein NBD-like... 31 0.75 At5g59510.1 68418.m07458 expressed protein 30 1.3 At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 30 1.3 At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 30 1.7 At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 29 3.0 At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 4.0 At1g63710.1 68414.m07210 cytochrome P450, putative similar to cy... 29 4.0 At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 27 9.3 >At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal protein S6, Arabidopsis thaliana, PID:g2662469 Length = 250 Score = 259 bits (635), Expect = 1e-69 Identities = 136/236 (57%), Positives = 160/236 (67%), Gaps = 8/236 (3%) Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60 MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60 Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118 FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120 Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 176 ++PGLTD PR GPKRASKIRKLFNL KEDDVR YV +R K+GKE + K Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176 Query: 177 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232 APKIQRLVTP+ LQ S A+Y KLLA R KE + RR E + Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232 >At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) Length = 249 Score = 259 bits (634), Expect = 1e-69 Identities = 134/236 (56%), Positives = 161/236 (68%), Gaps = 8/236 (3%) Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60 MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60 Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118 FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LSVL LVIV+KG Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120 Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 176 ++PGLTD PR GPKRASKIRKLFNL KEDDVR+YV +R K+GK+ + K Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176 Query: 177 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232 APKIQRLVTP+ LQ S A+Y KLLA R KE + RR E + Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232 >At5g02270.1 68418.m00150 ABC transporter family protein NBD-like protein POP, Arabidopsis thaliana, EMBL:AF127664 Length = 328 Score = 31.1 bits (67), Expect = 0.75 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 43 DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 98 ++W +++ VA G + PM++ T+ + LM S R RD ERKR+ R Sbjct: 221 EDWPTHIVYVANGKLQLALPMEKVKETSKKS--LMRTVESWLRKERDEERKRRKER 274 >At5g59510.1 68418.m07458 expressed protein Length = 144 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 115 RKGAQEIPGLTDGT----VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 160 R G+ + P T T + R L K AS RK N++KE R Y++KR Sbjct: 80 RSGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKR 129 >At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178: Krr1 family Length = 638 Score = 30.3 bits (65), Expect = 1.3 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 124 LTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 172 + +G+V ++ ++A + K + KEDDVR+ +KR+ + KE KE K Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338 >At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase domain-containing protein low similarity to RAD54 [Drosophila melanogaster] GI:1765914; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 888 Score = 29.9 bits (64), Expect = 1.7 Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 120 EIPGLTDGTVPRRLGPKRASKIRKL 144 E+PGL D TV L PK+ ++++KL Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644 >At1g21740.1 68414.m02721 expressed protein contains Pfam domains, PF04782: Protein of unknown function (DUF632) and PF04783: Protein of unknown function (DUF630) Length = 953 Score = 29.1 bits (62), Expect = 3.0 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%) Query: 13 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 44 +KL+ EV DE KLR+ YE++ + D LG E Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634 >At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / glyoxalase I, putative similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from [Brassica oleracea] Length = 350 Score = 28.7 bits (61), Expect = 4.0 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 8 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 63 P CQ + V D + FYEK G E+ + E+K Y + + G + FP+ Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270 >At1g63710.1 68414.m07210 cytochrome P450, putative similar to cytochrome P450 GB:O23066 [Arabidopsis thaliana] Length = 523 Score = 28.7 bits (61), Expect = 4.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 123 GLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV 157 G T+ T+ R + P+ KIRK L EDD+ R + Sbjct: 214 GATEATLQRFIMPEFIWKIRKWLRLGLEDDMSRSI 248 >At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2) identical to fatty acid multifunctional protein (AtMFP2) GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty acid beta-oxidation); contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase) Length = 725 Score = 27.5 bits (58), Expect = 9.3 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 88 RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GTVPRRL 133 R G K V +V D ++ + ++G ++PG+TD G VPR++ Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,945,495 Number of Sequences: 28952 Number of extensions: 188205 Number of successful extensions: 416 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 404 Number of HSP's gapped (non-prelim): 11 length of query: 253 length of database: 12,070,560 effective HSP length: 79 effective length of query: 174 effective length of database: 9,783,352 effective search space: 1702303248 effective search space used: 1702303248 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 58 (27.5 bits)
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