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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein
S6e
         (253 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   259   1e-69
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             259   1e-69
At5g02270.1 68418.m00150 ABC transporter family protein NBD-like...    31   0.75 
At5g59510.1 68418.m07458 expressed protein                             30   1.3  
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.3  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    30   1.7  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    29   3.0  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   4.0  
At1g63710.1 68414.m07210 cytochrome P450, putative similar to cy...    29   4.0  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   9.3  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  259 bits (635), Expect = 1e-69
 Identities = 136/236 (57%), Positives = 160/236 (67%), Gaps = 8/236 (3%)

Query: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 61  FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 176
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 177 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232
           APKIQRLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  259 bits (634), Expect = 1e-69
 Identities = 134/236 (56%), Positives = 161/236 (68%), Gaps = 8/236 (3%)

Query: 1   MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61  FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHK 176
            ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 177 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232
           APKIQRLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At5g02270.1 68418.m00150 ABC transporter family protein NBD-like
           protein POP, Arabidopsis thaliana, EMBL:AF127664
          Length = 328

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 43  DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVR 98
           ++W  +++ VA G  +   PM++   T+ +   LM    S  R  RD ERKR+  R
Sbjct: 221 EDWPTHIVYVANGKLQLALPMEKVKETSKKS--LMRTVESWLRKERDEERKRRKER 274


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 115 RKGAQEIPGLTDGT----VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 160
           R G+ + P  T  T    + R L  K AS  RK  N++KE   R Y++KR
Sbjct: 80  RSGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSRFYIMKR 129


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 124 LTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 172
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 120 EIPGLTDGTVPRRLGPKRASKIRKL 144
           E+PGL D TV   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 13  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 44
           +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 602 KKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8   PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 63
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g63710.1 68414.m07210 cytochrome P450, putative similar to
           cytochrome P450 GB:O23066 [Arabidopsis thaliana]
          Length = 523

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 123 GLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYV 157
           G T+ T+ R + P+   KIRK   L  EDD+ R +
Sbjct: 214 GATEATLQRFIMPEFIWKIRKWLRLGLEDDMSRSI 248


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 88  RDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD-GTVPRRL 133
           R G  K   V   +V  D    ++ +   ++G  ++PG+TD G VPR++
Sbjct: 264 RAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKI 312


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,945,495
Number of Sequences: 28952
Number of extensions: 188205
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 11
length of query: 253
length of database: 12,070,560
effective HSP length: 79
effective length of query: 174
effective length of database: 9,783,352
effective search space: 1702303248
effective search space used: 1702303248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)

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