Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein
S6e
(253 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 341 8e-93
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 340 2e-92
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 336 4e-91
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 242 7e-63
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 237 2e-61
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 231 1e-59
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 198 8e-50
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 197 3e-49
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 193 3e-48
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 192 1e-47
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 169 6e-41
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 142 8e-33
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 141 1e-32
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 125 1e-27
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 5e-27
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 6e-14
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 67 5e-10
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 63 6e-09
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 62 1e-08
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 62 1e-08
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 62 1e-08
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 62 1e-08
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 62 1e-08
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 59 1e-07
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 57 4e-07
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 56 9e-07
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 55 2e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 2e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 7e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 2e-04
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 48 3e-04
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 46 0.001
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.002
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.003
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 42 0.011
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.035
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 38 0.32
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 4.0
UniRef50_A3UBP5 Cluster: Putative uncharacterized protein; n=2; ... 33 5.2
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 33 5.2
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 5.2
UniRef50_UPI0000499C9B Cluster: alpha-NAC protein; n=2; Entamoeb... 33 9.2
UniRef50_Q3A5C8 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoar... 33 9.2
UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 341 bits (839), Expect = 8e-93
Identities = 170/232 (73%), Positives = 189/232 (81%), Gaps = 4/232 (1%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKD 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 180
IPGLTD TVPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKI
Sbjct: 121 IPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKI 176
Query: 181 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232
QRLVTP VLQ AEYAKLLA+R KE+K +RQE+I
Sbjct: 177 QRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 340 bits (835), Expect = 2e-92
Identities = 160/232 (68%), Positives = 188/232 (81%), Gaps = 3/232 (1%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKD 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 180
IPGLTD TV RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKI
Sbjct: 121 IPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKI 177
Query: 181 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232
QRL+TPVVLQ +EAEY K+L R+++ ++RR+ +
Sbjct: 178 QRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRL 229
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 336 bits (825), Expect = 4e-91
Identities = 158/232 (68%), Positives = 183/232 (78%), Gaps = 3/232 (1%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQD 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 180
IPGLTD T+PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKI
Sbjct: 121 IPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKI 177
Query: 181 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEI 232
QRLVTPVVLQ A+YAKLLA+R KE+K +R E++
Sbjct: 178 QRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 229
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 242 bits (592), Expect = 7e-63
Identities = 119/226 (52%), Positives = 153/226 (67%), Gaps = 7/226 (3%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG E
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAE 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 177
I GLT T+PR+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K
Sbjct: 121 IDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKC 176
Query: 178 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 223
PKIQRL+TP + +++ EY K L++ KK+
Sbjct: 177 PKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQ 222
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 237 bits (580), Expect = 2e-61
Identities = 114/188 (60%), Positives = 141/188 (75%), Gaps = 7/188 (3%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA E
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANE 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKA 177
I GLTD VPRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KA
Sbjct: 121 IAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKA 176
Query: 178 PKIQRLVT 185
PKIQRLVT
Sbjct: 177 PKIQRLVT 184
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 231 bits (566), Expect = 1e-59
Identities = 120/231 (51%), Positives = 146/231 (63%), Gaps = 5/231 (2%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG E
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNE 161
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKI 180
IPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKI
Sbjct: 162 IPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKI 216
Query: 181 QRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEE 231
QRLVT L EY K+L + + E + E+
Sbjct: 217 QRLVTEKRLLRKRTLIAKKEKRRLEKKKVIKEYKKVLNKYRNELLTKTDED 267
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 198 bits (484), Expect = 8e-50
Identities = 106/179 (59%), Positives = 125/179 (69%), Gaps = 18/179 (10%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS- 118
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 179
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 ---------PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 197 bits (480), Expect = 3e-49
Identities = 105/230 (45%), Positives = 145/230 (63%), Gaps = 7/230 (3%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 59
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 60 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKG 117
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVG 120
Query: 118 AQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKA 177
Q I G+TD T PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KA
Sbjct: 121 DQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKA 176
Query: 178 PKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVR 227
PKIQRL+TP V + EY +L+A ++ + R
Sbjct: 177 PKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 193 bits (471), Expect = 3e-48
Identities = 87/159 (54%), Positives = 121/159 (76%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 61
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 62 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 121
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEI 120
Query: 122 PGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 160
G+T+ +P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 121 EGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 192 bits (467), Expect = 1e-47
Identities = 96/224 (42%), Positives = 138/224 (61%), Gaps = 9/224 (4%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +E
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKE 120
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 179
I GLT VPRR GPKRAS +R +F ++ + D + V+KR K GK +PK
Sbjct: 121 IDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPK 172
Query: 180 IQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKE 223
+QRL+T + +Y LL Q++K+
Sbjct: 173 VQRLITARRVARKNRMLKERKEKREATKKKAEQYQALLKQQQKQ 216
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 169 bits (411), Expect = 6e-41
Identities = 94/231 (40%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 61
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 62 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 121
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTL 127
Query: 122 PGLTDGTVPRRLGPKRASKIRKLFNL--SKEDDVRRYVVKRV---LPAKEGKENAKPRHK 176
PGLTD VP+RL PKRASKIR+LF L +K D + +V + L + +N + + K
Sbjct: 128 PGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLK 187
Query: 177 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVR 227
PK+QR+VT EY LL++ K+ +R
Sbjct: 188 YPKVQRVVTDEKYARKQRVIAEKKEIMRKSLQQLEEYKALLSRMGKQHNIR 238
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 142 bits (344), Expect = 8e-33
Identities = 77/192 (40%), Positives = 119/192 (61%), Gaps = 13/192 (6%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKN 120
Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAP 178
++ +T+ + L KR+S +RK+ L+K DD+R++ +K AK+ K
Sbjct: 121 DDLL-ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV------- 169
Query: 179 KIQRLVTPVVLQ 190
KIQRL+TP+ +Q
Sbjct: 170 KIQRLITPIKIQ 181
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 141 bits (342), Expect = 1e-32
Identities = 79/137 (57%), Positives = 93/137 (67%), Gaps = 16/137 (11%)
Query: 51 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 110
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 111 LVIVRKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKE 169
L +V+KGA EI GLTD VPRRLGPKR +K+R+LF K D RV+ ++E G +
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQ 167
Query: 170 N-AKPRHKAPKIQRLVT 185
K R KAPKIQRLVT
Sbjct: 168 RYGKKRQKAPKIQRLVT 184
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 125 bits (301), Expect = 1e-27
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 15 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 74
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 75 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLG 134
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 135 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQR 182
P++ K+RK+F + E+ ++ +L ++ + K+ K RH +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S
ribosomal protein S6; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to 40S ribosomal protein S6 - Canis
familiaris
Length = 154
Score = 123 bits (296), Expect = 5e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 61 FPMKQGVLTNSRVRLLM 77
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 65.3 bits (152), Expect = 1e-09
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 8/71 (11%)
Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAK 172
++IPGLTD T PR +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 173 PRHKAPKIQRL 183
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens
(Human)
Length = 91
Score = 79.8 bits (188), Expect = 6e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 46
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 66.9 bits (156), Expect = 5e-10
Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 30/183 (16%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 61
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 62 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 120
MKQ VL + RV LL++ HS Y+P R E S++ V +S+L +VI+ G ++
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKD 109
Query: 121 IPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAP 178
IPG T +R PKR +I+ F++S +K VL K + K++ KPR K
Sbjct: 110 IPGQT-----KRWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTH 154
Query: 179 KIQ 181
K+Q
Sbjct: 155 KVQ 157
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 63.3 bits (147), Expect = 6e-09
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------LRV 52
KL +S P G K E+ ++ +R+G E+ A +LG E G L++
Sbjct: 5 KLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAKLKI 63
Query: 53 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV 112
GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+ + +
Sbjct: 64 TGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNIVQVNMK 122
Query: 113 IV 114
IV
Sbjct: 123 IV 124
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 62.5 bits (145), Expect = 1e-08
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 18/108 (16%)
Query: 72 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPR 131
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 132 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 179
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 62.5 bits (145), Expect = 1e-08
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV-LRV 52
KL +S P +G K E+ ++ KR+G ++ A +L G E+ V L +
Sbjct: 5 KLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVKLEI 63
Query: 53 AGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 99
GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 64 RGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 31 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 90
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 91 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 121
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 62.5 bits (145), Expect = 1e-08
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 5 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 62
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 63 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 117
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 14 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 71
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 72 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 116
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 58.8 bits (136), Expect = 1e-07
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 61 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGA 118
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S + LV +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNV 119
Query: 119 QEIPGLTDGTVPRRLGPKRASKIRKLF 145
+E + ++L KR +K++ LF
Sbjct: 120 KE--SSVFPSKEQKLA-KRVTKLKTLF 143
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 57.2 bits (132), Expect = 4e-07
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 5 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 64
V+ P +G FEV D F + +GA V+ +G + GY + + GG+D G PM+
Sbjct: 8 VADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDDAGRPMR 64
Query: 65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 124
+ V + + +L+ +G + + P DGERKR +VRG V ++ L + I G + + L
Sbjct: 65 EDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGEEPVAEL 123
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 56.0 bits (129), Expect = 9e-07
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 30 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 89
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 90 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGT 128
G R+RKS+RG + +++++ +V G+ + G + T
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGGEPEST 123
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 19 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 77
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 78 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 115
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 47 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 106
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 107 SVLALVIV 114
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 7e-05
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 30 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 89
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 90 GERKRKSVR 98
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 47 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 102
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 47.6 bits (108), Expect = 3e-04
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 2 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 58
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 59 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKG 117
+G PM GV + +++ G Y P + G +K+K VRG I D+ + + A+++ K
Sbjct: 64 EGAPMHPGV-PGPVKKYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKD 122
Query: 118 AQEIPGLTDG 127
P + G
Sbjct: 123 YTGPPAIPLG 132
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 46.0 bits (104), Expect = 0.001
Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 5 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 64
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 65 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 121
+ T + ++L+ K S YR ++G RKR + RG I+ ++++ + L I + G I
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 32 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 91
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 92 RKRKSVRG 99
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 47 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 106
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 107 SVLALVIVRKGAQEIPGL 124
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 42.3 bits (95), Expect = 0.011
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 58 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 117
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 118 AQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP-RHK 176
+ L G RRL K+R+L N D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 177 APK 179
AP+
Sbjct: 281 APR 283
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.035
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 32 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 91
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 92 RKRKSVRGCIVDANL 106
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 37.5 bits (83), Expect = 0.32
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D G
Sbjct: 7 VKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDIAG 61
Query: 61 FPMKQGV 67
FPM++ V
Sbjct: 62 FPMRKEV 68
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 33.9 bits (74), Expect = 4.0
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 62 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 120
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 121 I 121
+
Sbjct: 465 L 465
>UniRef50_A3UBP5 Cluster: Putative uncharacterized protein; n=2;
Flavobacteriaceae|Rep: Putative uncharacterized protein
- Croceibacter atlanticus HTCC2559
Length = 202
Score = 33.5 bits (73), Expect = 5.2
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 151 DDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP-VVLQXXXXXXXXXXXXXXXXXSS 209
+D++ YV++ + K+GKE KAPK + +V P +L
Sbjct: 104 EDIKSYVLEAIQNQKDGKEIKIA--KAPKAKDIVLPEELLAAFKSDKDFQTAFKALTPGR 161
Query: 210 EAEYAKLLAQRKKE-SKVRRQEEIK 233
+ EYA+ +A K+E ++V R E+ K
Sbjct: 162 QKEYAQHIASAKQEKTRVNRLEKAK 186
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 33.5 bits (73), Expect = 5.2
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 94 RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKE 150
+KS + C N ++ LV++RKG + LT G + K S RK+ N+SK+
Sbjct: 227 KKSSQSCSGRLNSYIVVLVMLRKGGWKSQQLTIGLARHEVAVKIRSLNRKIENISKD 283
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 5.2
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 2 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 60
KL+ SY A L EV D+ K RI+YE V + + GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEH---PNVASIKFGDITKTYVVLVEGHYDNTG 497
Query: 61 FPMKQGVL 68
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_UPI0000499C9B Cluster: alpha-NAC protein; n=2; Entamoeba
histolytica HM-1:IMSS|Rep: alpha-NAC protein - Entamoeba
histolytica HM-1:IMSS
Length = 437
Score = 32.7 bits (71), Expect = 9.2
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 134 GPKRASKIRKLFN--LSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQX 191
G K AS I + N K++D R R P K + AK +A KIQ +L+
Sbjct: 7 GGKIASLIDRYENNDKKKQEDARIVAEVRASPRKAAEAKAKEEAEAKKIQEENEKKILEE 66
Query: 192 XXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIK 233
+ E A+ A+ + E+K + + E K
Sbjct: 67 ARIKEEAEAKAKEEAEAKAKEEAEAKAKEEAEAKAKEEAEAK 108
>UniRef50_Q3A5C8 Cluster: Putative uncharacterized protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: Putative
uncharacterized protein - Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1)
Length = 980
Score = 32.7 bits (71), Expect = 9.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 124 LTDGTVPRRL----GPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 179
LTD VP + G A N +DD+R V +++LPA E PR +
Sbjct: 415 LTDNLVPYHIQGGIGRVGARMPDLTINRQVQDDLRFLVTEKILPALPSAERMNPRAALDE 474
Query: 180 IQRLV 184
I+RLV
Sbjct: 475 IRRLV 479
>UniRef50_A0N0V6 Cluster: Putative regulatory protein; n=2; Azoarcus
anaerobius|Rep: Putative regulatory protein - Azoarcus
anaerobius
Length = 661
Score = 32.7 bits (71), Expect = 9.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 76 LMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLGP 135
++ GH YR R +R+ D ++ + L ++R +E G D V R+LG
Sbjct: 582 IIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEFNGNVD-LVGRKLGL 640
Query: 136 KRASKIRKL 144
RA+ R++
Sbjct: 641 SRATVYRRM 649
>UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1146
Score = 32.7 bits (71), Expect = 9.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 126 DGTVPRRLGPKRASKIRK-LFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 182
D + + PK+ S +K + + S EDD K++L + + E KPR K+P+ +R
Sbjct: 1012 DSSDEEEIKPKQKSPQKKPILSSSSEDDAIPPPKKKLLDSSDDDEEIKPRQKSPQKKR 1069
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,040,237
Number of Sequences: 1657284
Number of extensions: 8476277
Number of successful extensions: 18981
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 18913
Number of HSP's gapped (non-prelim): 52
length of query: 253
length of database: 575,637,011
effective HSP length: 99
effective length of query: 154
effective length of database: 411,565,895
effective search space: 63381147830
effective search space used: 63381147830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 71 (32.7 bits)
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