GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein
S6e
         (253 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   3.9  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.9  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.1  

>AY600516-1|AAT11864.1|  143|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 1  MKLNVSYPATGCQKLFEVVDEHKLRI 26
          M ++   P+TG Q + +VV  HKL++
Sbjct: 54 MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
          optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 1  MKLNVSYPATGCQKLFEVVDEHKLRI 26
          M ++   P+TG Q + +VV  HKL++
Sbjct: 54 MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 147 LSKEDDVRRYVVKRVLPAKEGKENAK 172
           L +E+D+ +  +KRV   KE   N K
Sbjct: 71  LDEENDINQGGLKRVSALKEKNPNLK 96


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 120 EIPGLTDGTVPRRLGPKRASK 140
           E+P L  G VPR+  P ++++
Sbjct: 817 EVPMLLHGVVPRKEIPAKSAE 837


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,964
Number of Sequences: 317
Number of extensions: 1617
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 253
length of database: 114,650
effective HSP length: 55
effective length of query: 198
effective length of database: 97,215
effective search space: 19248570
effective search space used: 19248570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)