GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001501-TA|BGIBMGA001501-PA|IPR001377|Ribosomal protein
S6e
         (253 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              283   7e-77
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      30   2.1  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            29   2.8  
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 29   4.9  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.9  
SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9)                     29   4.9  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.9  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   6.5  
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_23105| Best HMM Match : UPF0184 (HMM E-Value=9.3)                   28   8.6  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   8.6  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  283 bits (695), Expect = 7e-77
 Identities = 135/198 (68%), Positives = 156/198 (78%), Gaps = 3/198 (1%)

Query: 35  EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 94
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 95  KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVR 154
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD T+PRRLGPKR  KIRK+FNLSKEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 155 RYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYA 214
           +YV++R LP KEGK   K + KAPKIQRLVTPVVLQ                    A+YA
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYA 178

Query: 215 KLLAQRKKESKVRRQEEI 232
           KLLA+R KE+K +R E++
Sbjct: 179 KLLAKRAKEAKEKRHEQL 196


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 97  VRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLGPKRASKIRK 143
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 115 RKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 174
           RK     PG    + P+    KR    ++   LS  D+   ++V+   P K   E+AK R
Sbjct: 883 RKYRTPSPGCFIDSPPQDKTSKRPPSAQR--QLSAVDEYTTFLVQPRPPPKPRAESAKTR 940

Query: 175 HKAPKIQRL 183
           H +P   RL
Sbjct: 941 HHSPGASRL 949


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 115 RKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 174
           RK     PG    + P+    KR    ++   LS  D+   ++V+   P K   E+AK R
Sbjct: 78  RKYRTPSPGCFIDSPPQDKTSKRPPSAQR--QLSAVDEYTTFLVQPRPPPKPRAESAKTR 135

Query: 175 HKAPKIQRL 183
           H +P   RL
Sbjct: 136 HHSPGASRL 144


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 91  ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGTVPRRLGPKRASKIRKLFNLSKE 150
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K     +L KE
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMK-----SLVKE 243

Query: 151 DDVRRYVVKRVLPAKEGKENAKPRHK 176
            ++ + V +R    +E ++  K + K
Sbjct: 244 LELEKLVEQRSELVQEKQKKKKEKEK 269


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 37  EADQLGDEWKGYVL--RVAGGNDKQGFPMK 64
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_523| Best HMM Match : zf-C2H2 (HMM E-Value=4.9)
          Length = 149

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 122 PGLTDGTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQ 181
           PG    + P+    KR    ++   LS  D+   ++V+   P K   E+AK RH +P   
Sbjct: 5   PGCFIDSPPQDKTSKRPPSAQR--QLSAVDEYTTFLVQPRPPPKPRAESAKTRHHSPGAS 62

Query: 182 RL 183
           RL
Sbjct: 63  RL 64


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 127 GTVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 159
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/26 (42%), Positives = 20/26 (76%)

Query: 208  SSEAEYAKLLAQRKKESKVRRQEEIK 233
            ++EAE  +L  Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198


>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 143 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 182
           + F+++KEDD+  Y++   L  +  K NA   ++ P+  R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176


>SB_23105| Best HMM Match : UPF0184 (HMM E-Value=9.3)
          Length = 94

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 33 GAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGER 92
          G ++ +D+   E+K  VL + GGN       K  +   +   L+  + H    P  D + 
Sbjct: 22 GMQILSDEETSEFKKMVLNLLGGNQDAVEERKNHMALENNYNLVWDENHLSKAPSEDDDE 81

Query: 93 KRKS 96
          + ++
Sbjct: 82 ESEA 85


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 138 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 174
           A  ++ + +    DDV+  ++K ++P KEG E+  P+
Sbjct: 22  AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,071,567
Number of Sequences: 59808
Number of extensions: 269687
Number of successful extensions: 655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 12
length of query: 253
length of database: 16,821,457
effective HSP length: 80
effective length of query: 173
effective length of database: 12,036,817
effective search space: 2082369341
effective search space used: 2082369341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)