Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    62   1e-10
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    31   0.14 
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    28   1.3  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.3  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   4.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   5.2  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   9.1  

>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 33/223 (14%)

Query: 44  KPLEVTNLA-GRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPTEGPPQEEKVIQIIEDGC 102
           +PL V     G   ETGR+           +   +D+ R       P   +VI+I  D  
Sbjct: 39  RPLTVAKRKKGGRNETGRITVRHQGGGHKQRIRLVDFERK-----VPGVHRVIRIEYDPG 93

Query: 103 RTAHVALV----AVGDQLKYILATENMKAGDIIKTSCKLPRI----------PVRANE-- 146
           R+ H+ALV    +      YILA + ++ GD +++   L +           PV A E  
Sbjct: 94  RSGHIALVEKLNSETANKSYILACDGLREGDTVESFRSLLKTGSNGEPVEMDPVLAAEIE 153

Query: 147 -----------GDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQ 195
                      G+ + L  +PIGT++H +   P Q      +AG+S  I+       IV+
Sbjct: 154 DGTFAAKNLKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAFDGKYAIVR 213

Query: 196 MPSKRLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRP 238
           + S           A +G +SN+      +G   R+RWLG RP
Sbjct: 214 LQSGEERKILDTSFATIGVVSNIYWQHRQLGKAGRSRWLGIRP 256


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 4   RRNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKP 45
           R++LHV V     KP IE+P+  +G   R  V++ E+   +P
Sbjct: 68  RKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEP 109


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 201 LFSFNQLCMAVVGRLSNVLHGSTPIGS 227
           LF+ +Q C  +     N++H S PIGS
Sbjct: 574 LFTLDQTCNIIAKLADNLIHPSVPIGS 600


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 160 IVHCVEKEPGQGGLYIHAA---GTSGTIVRKQDDRVIVQMPSKRL 201
           I+ C++K P  G +++H +   G +GT +       I+Q+P   L
Sbjct: 613 IIRCIDKVPNDGPMFVHCSAGVGRTGTFIAVDQ---ILQVPKNIL 654


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 213 GRLSN--VLHGSTPIGSPQRNRWLGNRPRSGLWQR 245
           G +SN  +++ STP+G+ QR  +L  R     WQ+
Sbjct: 29  GSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQK 63


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 105 AHVALVAVGDQLKYILATENMKA---GDIIKTSCKLPRIPVRANEGDAYVLGALPI-GTI 160
           A V+L+  G+ L   L+   ++    G II T   L      A  G A +L +  + G  
Sbjct: 3   ASVSLLPEGESLHRSLSASQIQMLAFGGIIGTGLFLGIGSSLAESGPASLLISFSVLGVS 62

Query: 161 VHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVI 193
           V+C     G+  +Y+  AG+  T V +  D  +
Sbjct: 63  VYCTMLALGEMSVYMPVAGSFCTYVGRYVDEAL 95


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 256 PPKPVKQICNPTSTKLPPIILNMTP 280
           P  P++ +  PT T++ P+ L+  P
Sbjct: 44  PVNPIRPVYTPTRTEITPVTLSPIP 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,002
Number of Sequences: 5004
Number of extensions: 54697
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 2,362,478
effective HSP length: 72
effective length of query: 208
effective length of database: 2,002,190
effective search space: 416455520
effective search space used: 416455520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)