GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.8  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   7.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 14  SASKPNIEKPKPGFGKSYR 32
           S+S    E+P+PG G  Y+
Sbjct: 100 SSSDSEDERPRPGGGTKYQ 118


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory
          receptor candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 15 ASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPL 46
          AS   +  P+P F +++  +V F + + + PL
Sbjct: 17 ASDAVLAYPQPSFHQTFSFVVIFGQFFGIMPL 48


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,667
Number of Sequences: 317
Number of extensions: 3065
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 280
length of database: 114,650
effective HSP length: 56
effective length of query: 224
effective length of database: 96,898
effective search space: 21705152
effective search space used: 21705152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)