GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    28   7.3  
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703...    28   9.6  

>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 235 GNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTSTKL 271
           G+ P   +WQ +  RH   ++PP+  ++  +P +T+L
Sbjct: 116 GDDPYGSVWQAQGARHQVLVRPPRSPRE--DPMATQL 150


>04_04_1358 +
           32869222-32869306,32869947-32870008,32870301-32870393,
           32870640-32870761,32873139-32873167,32873586-32873891,
           32873977-32874035,32874148-32874279,32874414-32874455,
           32874560-32875093,32875189-32875379,32875538-32876027,
           32876273-32876335,32876704-32876805,32876895-32877215,
           32877294-32877386,32877484-32877585,32877718-32877822,
           32877933-32878066,32878429-32878612,32879226-32879357,
           32879447-32879559,32879628-32879709,32880328-32881992
          Length = 1746

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 236 NRPRSGLWQRKSGRHGRKIKPPKPVKQICNP 266
           N+PR G  + KS +H R   PP P     +P
Sbjct: 158 NKPRDGA-KHKSSKHARPATPPSPPALAASP 187


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,771
Number of Sequences: 37544
Number of extensions: 415371
Number of successful extensions: 770
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 2
length of query: 280
length of database: 14,793,348
effective HSP length: 81
effective length of query: 199
effective length of database: 11,752,284
effective search space: 2338704516
effective search space used: 2338704516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)