GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)   123   1e-28
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)        40   0.003
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      32   0.60 
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   7.4  
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  28   9.8  
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   28   9.8  
SB_21651| Best HMM Match : ETF_alpha (HMM E-Value=9.7)                 28   9.8  
SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                  28   9.8  
SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)                   28   9.8  

>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score =  123 bits (297), Expect = 1e-28
 Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 7/194 (3%)

Query: 52  AGRDPETGRVVAXXXXXXXXHKYHWIDWYR----VGPTEGPPQEEKVIQIIEDGCRTAHV 107
           +GR+  +G++V           Y  ID+ R    +      P ++KV+Q+  D CR+A +
Sbjct: 15  SGRN-SSGQIVLRHRGGGHSQNYRIIDFIRAPLCITGEAVTPIKDKVLQVGYDPCRSARI 73

Query: 108 ALVAVG--DQLKYILATENMKAGDIIKTSCKLPRIPVRANEGDAYVLGALPIGTIVHCVE 165
           ALVA    +Q K ++A + ++ GD++  S   P        GDAY L  LPIGT+VH +E
Sbjct: 74  ALVAGNGSNQEKLVIAPDEIQVGDVMTASRGKPESLALLKPGDAYPLCFLPIGTVVHNIE 133

Query: 166 KEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQLCMAVVGRLSNVLHGSTPI 225
             PG+G     AAGTS  ++RK ++  +V++PSK     +  C+A VGR+SN+   +  I
Sbjct: 134 LYPGKGAQLARAAGTSAQLIRKTNETAVVRLPSKVEKEVSSKCLASVGRVSNIERKNRVI 193

Query: 226 GSPQRNRWLGNRPR 239
           G   RNRWL  RP+
Sbjct: 194 GKAGRNRWLNRRPK 207


>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKYIL------ATENMKAGDIIKTSCKLPRIPVRANEG 147
           V +II D  R A +A+V   D  +Y L      ATE M  G  I    K          G
Sbjct: 45  VKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKK-----AALQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIV--RKQDDRVIVQMPS 198
           +   +G +P GTI+  VE++ G  G     +G   T++    +  R  V++PS
Sbjct: 100 NCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPS 152


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKYIL------ATENMKAGDIIKTSCKLPRIPVRANEG 147
           V +II D  R A +A+V   D  +Y L      ATE M  G  I    K          G
Sbjct: 3   VKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKK-----AALQIG 57

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIV--RKQDDRVIVQMPS 198
           +   +G +P GTI+  VE++ G  G     +G   T++    +  R  V++PS
Sbjct: 58  NCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPS 110


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 209 MAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTS 268
           MA+   + ++  GS+P GSP+  R L + P  G    + G   + + P K +  +   T 
Sbjct: 502 MALPAPIPSLSSGSSPGGSPKGRRRLPSLPTDG---ERRGSQRKVVSPGKQLLNVPGRTQ 558

Query: 269 TKLP 272
            KLP
Sbjct: 559 RKLP 562


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 216  SNVLHGSTPIGSPQR---NRWLGNRPRSGLWQRKSGRHGRKIKPPK 258
            SN L G+T    P+R   +R   +RPRS    R+ G  GR   PP+
Sbjct: 1016 SNRLPGTTNEQLPRRRPRDRSSSDRPRSSRRNREGGSQGRTKDPPE 1061


>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1059

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 3   ARRNLHVGVVHSASKPNIEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPET 58
           +RR L  G   S  +P  +K KP   ++ +  VH       KP+      GR P T
Sbjct: 546 SRRTLFTGQPKSDDEPAAKKSKPIAAEALKTFVHSATS-PFKPIPAEEEMGRGPNT 600


>SB_43292| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 645

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 235 GNRPRSGLW-QRKSGRHGRKIKPPKPVKQICN 265
           GN   SG+   RKS +   KI P KPV++I N
Sbjct: 49  GNIKSSGVTVARKSNKRNSKIIPKKPVQEITN 80


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 235  GNRPRSGLW-QRKSGRHGRKIKPPKPVKQICN 265
            GN   SG+   RKS +   KI P KPV++I N
Sbjct: 1185 GNIKSSGVTVARKSNKRNSKIIPKKPVQEITN 1216


>SB_21651| Best HMM Match : ETF_alpha (HMM E-Value=9.7)
          Length = 166

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 227 SPQRNRWLGNRPRSGLWQRKSGRHGRKI 254
           SP   R  G RPR  LWQ + GR G KI
Sbjct: 49  SPSTCRKKGERPRVNLWQAE-GRKGIKI 75


>SB_48580| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 847

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 235 GNRPRSGLW-QRKSGRHGRKIKPPKPVKQICN 265
           GN   SG+   RKS +   KI P KPV++I N
Sbjct: 49  GNIKSSGVTVARKSNKRNSKIIPKKPVQEITN 80


>SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 86  EGPPQEEKVIQIIED----GCRTA----HVALVAVGDQLKYILATENMKAGDIIKTSCKL 137
           EGP    KV+ +I+     G  T     H      G +L  + ATE    G   K + KL
Sbjct: 428 EGPRTWPKVLMVIDGTEFKGATTKLLTDHGVEGTTGAKLSDMNATETRMTGFAPKDAIKL 487

Query: 138 PRIPVRANEGDAYVLGALPIGTIVHCVEKE 167
            R+P++A +    V   L +GT V+    E
Sbjct: 488 RRVPLKAEKPPLEV--PLEVGTEVYIAVNE 515


>SB_5164| Best HMM Match : FYRN (HMM E-Value=6.3e-15)
          Length = 435

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 235 GNRPRSGLW-QRKSGRHGRKIKPPKPVKQICN 265
           GN   SG+   RKS +   KI P KPV++I N
Sbjct: 49  GNIKSSGVTVARKSNKRNSKIIPKKPVQEITN 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,054
Number of Sequences: 59808
Number of extensions: 443963
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 12
length of query: 280
length of database: 16,821,457
effective HSP length: 81
effective length of query: 199
effective length of database: 11,977,009
effective search space: 2383424791
effective search space used: 2383424791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)