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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p pro...   341   9e-94
AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA...   341   9e-94
BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p pro...    33   0.44 
AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p pro...    33   0.44 
AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal pr...    33   0.44 
AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,...    33   0.44 
AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,...    33   0.44 
BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p pro...    33   0.58 

>AY113486-1|AAM29491.1|  294|Drosophila melanogaster RE45450p
           protein.
          Length = 294

 Score =  341 bits (837), Expect = 9e-94
 Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%)

Query: 20  IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79
           +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA         +Y W+ W
Sbjct: 35  VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94

Query: 80  YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139
            R GPTEG  QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS  +PR
Sbjct: 95  VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153

Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199
           IPVR NEGDAY LGALP+GT +HC+EK PGQ    IHAAGT GTI+RK D++V+VQ+PSK
Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213

Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259
           R F+F + CMA VGRLSN  H    +GS QR R +GNRPRSGLW+RK G+HGRKI+   P
Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLTP 273

Query: 260 VKQICNPTSTKLPPIILNM 278
           +  I  P   K   I L +
Sbjct: 274 MTTISPPAPPKEEAIKLTL 292


>AE014296-1910|AAF50091.1|  294|Drosophila melanogaster CG7636-PA
           protein.
          Length = 294

 Score =  341 bits (837), Expect = 9e-94
 Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%)

Query: 20  IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79
           +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA         +Y W+ W
Sbjct: 35  VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94

Query: 80  YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139
            R GPTEG  QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS  +PR
Sbjct: 95  VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153

Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199
           IPVR NEGDAY LGALP+GT +HC+EK PGQ    IHAAGT GTI+RK D++V+VQ+PSK
Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213

Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259
           R F+F + CMA VGRLSN  H    +GS QR R +GNRPRSGLW+RK G+HGRKI+   P
Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLPP 273

Query: 260 VKQICNPTSTKLPPIILNM 278
           +  I  P   K   I L +
Sbjct: 274 MTTISPPAPPKEEAIKLTL 292


>BT014913-1|AAT47764.1|  256|Drosophila melanogaster RH21963p
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
           V  II D  R A +A+V   D  +Y       +A E M  G  +    K          G
Sbjct: 45  VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
           +   L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152


>AY071342-1|AAL48964.1|  256|Drosophila melanogaster RE37829p
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
           V  II D  R A +A+V   D  +Y       +A E M  G  +    K          G
Sbjct: 45  VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
           +   L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152


>AF098520-1|AAF06828.1|  256|Drosophila melanogaster ribosomal
           protein L8 protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
           V  II D  R A +A+V   D  +Y       +A E M  G  +    K          G
Sbjct: 45  VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
           +   L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152


>AE014296-477|AAF47660.1|  256|Drosophila melanogaster CG1263-PB,
           isoform B protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
           V  II D  R A +A+V   D  +Y       +A E M  G  +    K          G
Sbjct: 45  VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
           +   L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152


>AE014296-476|AAF47659.1|  256|Drosophila melanogaster CG1263-PA,
           isoform A protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.44
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
           V  II D  R A +A+V   D  +Y       +A E M  G  +    K          G
Sbjct: 45  VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99

Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
           +   L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152


>BT022891-1|AAY55307.1|  579|Drosophila melanogaster IP12501p
           protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 13/110 (11%)

Query: 97  IIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEGDAY 150
           II D  R A +A+V   D  +Y       +A E M  G  +    K          G+  
Sbjct: 3   IIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIGNVM 57

Query: 151 VLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
            L  +P GTI+  +E++ G  G     +G   T++    D  +  V++PS
Sbjct: 58  PLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 107


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,699
Number of Sequences: 52641
Number of extensions: 683572
Number of successful extensions: 1480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 24,830,863
effective HSP length: 84
effective length of query: 196
effective length of database: 20,409,019
effective search space: 4000167724
effective search space used: 4000167724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)

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