BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic acid-binding, OB-fold (280 letters) Database: fruitfly 52,641 sequences; 24,830,863 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p pro... 341 9e-94 AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA... 341 9e-94 BT014913-1|AAT47764.1| 256|Drosophila melanogaster RH21963p pro... 33 0.44 AY071342-1|AAL48964.1| 256|Drosophila melanogaster RE37829p pro... 33 0.44 AF098520-1|AAF06828.1| 256|Drosophila melanogaster ribosomal pr... 33 0.44 AE014296-477|AAF47660.1| 256|Drosophila melanogaster CG1263-PB,... 33 0.44 AE014296-476|AAF47659.1| 256|Drosophila melanogaster CG1263-PA,... 33 0.44 BT022891-1|AAY55307.1| 579|Drosophila melanogaster IP12501p pro... 33 0.58 >AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p protein. Length = 294 Score = 341 bits (837), Expect = 9e-94 Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%) Query: 20 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79 +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA +Y W+ W Sbjct: 35 VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94 Query: 80 YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139 R GPTEG QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS +PR Sbjct: 95 VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153 Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199 IPVR NEGDAY LGALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSK Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213 Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259 R F+F + CMA VGRLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLTP 273 Query: 260 VKQICNPTSTKLPPIILNM 278 + I P K I L + Sbjct: 274 MTTISPPAPPKEEAIKLTL 292 >AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA protein. Length = 294 Score = 341 bits (837), Expect = 9e-94 Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%) Query: 20 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79 +EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA +Y W+ W Sbjct: 35 VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94 Query: 80 YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139 R GPTEG QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS +PR Sbjct: 95 VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153 Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199 IPVR NEGDAY LGALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSK Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213 Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259 R F+F + CMA VGRLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLPP 273 Query: 260 VKQICNPTSTKLPPIILNM 278 + I P K I L + Sbjct: 274 MTTISPPAPPKEEAIKLTL 292 >BT014913-1|AAT47764.1| 256|Drosophila melanogaster RH21963p protein. Length = 256 Score = 33.1 bits (72), Expect = 0.44 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147 V II D R A +A+V D +Y +A E M G + K G Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99 Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 + L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152 >AY071342-1|AAL48964.1| 256|Drosophila melanogaster RE37829p protein. Length = 256 Score = 33.1 bits (72), Expect = 0.44 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147 V II D R A +A+V D +Y +A E M G + K G Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99 Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 + L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152 >AF098520-1|AAF06828.1| 256|Drosophila melanogaster ribosomal protein L8 protein. Length = 256 Score = 33.1 bits (72), Expect = 0.44 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147 V II D R A +A+V D +Y +A E M G + K G Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99 Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 + L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152 >AE014296-477|AAF47660.1| 256|Drosophila melanogaster CG1263-PB, isoform B protein. Length = 256 Score = 33.1 bits (72), Expect = 0.44 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147 V II D R A +A+V D +Y +A E M G + K G Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99 Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 + L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152 >AE014296-476|AAF47659.1| 256|Drosophila melanogaster CG1263-PA, isoform A protein. Length = 256 Score = 33.1 bits (72), Expect = 0.44 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147 V II D R A +A+V D +Y +A E M G + K G Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99 Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 + L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152 >BT022891-1|AAY55307.1| 579|Drosophila melanogaster IP12501p protein. Length = 579 Score = 32.7 bits (71), Expect = 0.58 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 13/110 (11%) Query: 97 IIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEGDAY 150 II D R A +A+V D +Y +A E M G + K G+ Sbjct: 3 IIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIGNVM 57 Query: 151 VLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198 L +P GTI+ +E++ G G +G T++ D + V++PS Sbjct: 58 PLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 107 Database: fruitfly Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 24,830,863 Number of sequences in database: 52,641 Lambda K H 0.319 0.138 0.429 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,360,699 Number of Sequences: 52641 Number of extensions: 683572 Number of successful extensions: 1480 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 1476 Number of HSP's gapped (non-prelim): 8 length of query: 280 length of database: 24,830,863 effective HSP length: 84 effective length of query: 196 effective length of database: 20,409,019 effective search space: 4000167724 effective search space used: 4000167724 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 61 (28.7 bits)
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