Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
(280 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p pro... 341 9e-94
AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA... 341 9e-94
BT014913-1|AAT47764.1| 256|Drosophila melanogaster RH21963p pro... 33 0.44
AY071342-1|AAL48964.1| 256|Drosophila melanogaster RE37829p pro... 33 0.44
AF098520-1|AAF06828.1| 256|Drosophila melanogaster ribosomal pr... 33 0.44
AE014296-477|AAF47660.1| 256|Drosophila melanogaster CG1263-PB,... 33 0.44
AE014296-476|AAF47659.1| 256|Drosophila melanogaster CG1263-PA,... 33 0.44
BT022891-1|AAY55307.1| 579|Drosophila melanogaster IP12501p pro... 33 0.58
>AY113486-1|AAM29491.1| 294|Drosophila melanogaster RE45450p
protein.
Length = 294
Score = 341 bits (837), Expect = 9e-94
Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%)
Query: 20 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79
+EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA +Y W+ W
Sbjct: 35 VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94
Query: 80 YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139
R GPTEG QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS +PR
Sbjct: 95 VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153
Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199
IPVR NEGDAY LGALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSK
Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213
Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259
R F+F + CMA VGRLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P
Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLTP 273
Query: 260 VKQICNPTSTKLPPIILNM 278
+ I P K I L +
Sbjct: 274 MTTISPPAPPKEEAIKLTL 292
>AE014296-1910|AAF50091.1| 294|Drosophila melanogaster CG7636-PA
protein.
Length = 294
Score = 341 bits (837), Expect = 9e-94
Identities = 160/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%)
Query: 20 IEKPKPGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDW 79
+EKPKPG G+ +RR VHFPE+YTV+PL++T+LAGRDP +GR+VA +Y W+ W
Sbjct: 35 VEKPKPGAGQQFRRTVHFPEKYTVEPLKITHLAGRDPVSGRLVAKGIGGGIKQQYRWVKW 94
Query: 80 YRVGPTEGPPQEEKVIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPR 139
R GPTEG QEE V++++ DGCRTA VALVAVGD+LKYILATENMKAGDI+KTS +PR
Sbjct: 95 VRDGPTEGA-QEELVLEVLRDGCRTAKVALVAVGDELKYILATENMKAGDILKTSRFIPR 153
Query: 140 IPVRANEGDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDDRVIVQMPSK 199
IPVR NEGDAY LGALP+GT +HC+EK PGQ IHAAGT GTI+RK D++V+VQ+PSK
Sbjct: 154 IPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLIHAAGTFGTILRKFDEKVVVQLPSK 213
Query: 200 RLFSFNQLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKP 259
R F+F + CMA VGRLSN H +GS QR R +GNRPRSGLW+RK G+HGRKI+ P
Sbjct: 214 REFAFQRTCMATVGRLSNPEHNKEHVGSAQRMREMGNRPRSGLWKRKEGKHGRKIRRLPP 273
Query: 260 VKQICNPTSTKLPPIILNM 278
+ I P K I L +
Sbjct: 274 MTTISPPAPPKEEAIKLTL 292
>BT014913-1|AAT47764.1| 256|Drosophila melanogaster RH21963p
protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.44
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A+V D +Y +A E M G + K G
Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152
>AY071342-1|AAL48964.1| 256|Drosophila melanogaster RE37829p
protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.44
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A+V D +Y +A E M G + K G
Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152
>AF098520-1|AAF06828.1| 256|Drosophila melanogaster ribosomal
protein L8 protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.44
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A+V D +Y +A E M G + K G
Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152
>AE014296-477|AAF47660.1| 256|Drosophila melanogaster CG1263-PB,
isoform B protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.44
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A+V D +Y +A E M G + K G
Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152
>AE014296-476|AAF47659.1| 256|Drosophila melanogaster CG1263-PA,
isoform A protein.
Length = 256
Score = 33.1 bits (72), Expect = 0.44
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A+V D +Y +A E M G + K G
Sbjct: 45 VKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIG 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 100 NVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 152
>BT022891-1|AAY55307.1| 579|Drosophila melanogaster IP12501p
protein.
Length = 579
Score = 32.7 bits (71), Expect = 0.58
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
Query: 97 IIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEGDAY 150
II D R A +A+V D +Y +A E M G + K G+
Sbjct: 3 IIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRK-----ATLQIGNVM 57
Query: 151 VLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
L +P GTI+ +E++ G G +G T++ D + V++PS
Sbjct: 58 PLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPS 107
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.319 0.138 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,699
Number of Sequences: 52641
Number of extensions: 683572
Number of successful extensions: 1480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 24,830,863
effective HSP length: 84
effective length of query: 196
effective length of database: 20,409,019
effective search space: 4000167724
effective search space used: 4000167724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -