Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
(280 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 186 2e-47
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 30 2.1
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 30 2.1
AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protei... 30 2.1
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 30 2.1
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 30 2.1
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 6.5
U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical pr... 28 8.5
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 28 8.5
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 28 8.5
AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 28 8.5
AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 28 8.5
AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (droso... 28 8.5
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 28 8.5
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 186 bits (452), Expect = 2e-47
Identities = 100/235 (42%), Positives = 138/235 (58%), Gaps = 2/235 (0%)
Query: 40 QYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPTE-GPPQEEKVIQII 98
QYT KPL + L GRDPETGR V Y ID++R GP + G +E++++I
Sbjct: 52 QYTHKPLRINRLGGRDPETGRKVNQHIGGGVKFDYFMIDFHRRGPADQGATYDERILEIR 111
Query: 99 EDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPRIPVRANEGDAYVLGALPIG 158
D RT H+AL A + ++ILATENMKAGD+I TS L PV EG+AY +G+L G
Sbjct: 112 RDPNRTCHIALCAGINGKRWILATENMKAGDVISTSGHLSENPVIGVEGNAYPIGSLAAG 171
Query: 159 TIVHCVEKEPGQGG-LYIHAAGTSGTIVRKQDDRVIVQMPSKRLFSFNQLCMAVVGRLSN 217
T+++ +E+ P ++ AAGTS TIVR Q D +V++P K FS ++ CMA VGRLS+
Sbjct: 172 TVINSIERYPTMDSETFVKAAGTSATIVRHQGDFTVVKLPHKHEFSLHRTCMATVGRLSH 231
Query: 218 VLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTSTKLP 272
GS Q +R G + SGL+ +K G GRK++ PV+ + P P
Sbjct: 232 ADIDGKIFGSAQMHRRFGYKMSSGLFHKKDGYFGRKVRALPPVRILDTPPQAPPP 286
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 94 VIQIIEDGCRTAHVALVAVGDQLKY------ILATENMKAGDIIKTSCKLPRIPVRANEG 147
V II D R A +A++A D KY ++A E M G I K +I + G
Sbjct: 45 VKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKA-QIQI----G 99
Query: 148 DAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRKQDD--RVIVQMPS 198
+ +G LP GT + VE + G G+ A+G T++ D + +++PS
Sbjct: 100 NIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPS 152
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VALVAVGDQLKYILATENMKAGDIIKTSC 135
V +VA+ DQ K + TE + G+ +TSC
Sbjct: 405 VRIVAIDDQNKVVARTEELTVGEAAETSC 433
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VALVAVGDQLKYILATENMKAGDIIKTSC 135
V +VA+ DQ K + TE + G+ +TSC
Sbjct: 405 VRIVAIDDQNKVVARTEELTVGEAAETSC 433
>AF040648-6|AAO91708.1| 908|Caenorhabditis elegans Lethal protein
805, isoform d protein.
Length = 908
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VALVAVGDQLKYILATENMKAGDIIKTSC 135
V +VA+ DQ K + TE + G+ +TSC
Sbjct: 405 VRIVAIDDQNKVVARTEELTVGEAAETSC 433
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VALVAVGDQLKYILATENMKAGDIIKTSC 135
V +VA+ DQ K + TE + G+ +TSC
Sbjct: 405 VRIVAIDDQNKVVARTEELTVGEAAETSC 433
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 VALVAVGDQLKYILATENMKAGDIIKTSC 135
V +VA+ DQ K + TE + G+ +TSC
Sbjct: 405 VRIVAIDDQNKVVARTEELTVGEAAETSC 433
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 81 RVGPTEGPPQEEKVIQIIEDGC 102
R+G TE PP+ E IQ ++D C
Sbjct: 14 RIGSTELPPRVENAIQFLDDQC 35
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 235 GNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTSTKLPP 273
G RP ++ + G G PP P + C P + PP
Sbjct: 104 GRRPEYEEYEDEEGNPGGVPAPPNPPRTCCPPPTPAAPP 142
>U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical
protein C13E3.1 protein.
Length = 770
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 216 SNVLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIK 255
S +LH S P SPQ WL R G+ ++K+ + R+++
Sbjct: 595 SEILH-SMPGLSPQTKTWLKQVTRYGVLKQKADKEERRVE 633
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2203 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2262
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2263 EAPKIVEEIEEIVQ 2276
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2120 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2179
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2180 EAPKIVEEIEEIVQ 2193
>AF106579-3|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2441 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2500
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2501 EAPKIVEEIEEIVQ 2514
>AF106579-2|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2441 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2500
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2501 EAPKIVEEIEEIVQ 2514
>AF106579-1|AAC78200.4| 4889|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4889
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2842 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2901
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2902 EAPKIVEEIEEIVQ 2915
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 27 FGKSYRRIVH-FPEQYTVKPLEVTNLAGRDPETGRVVAXXXXXXXXHKYHWIDWYRVGPT 85
FG + IVH P V N G + V H + W R+
Sbjct: 2136 FGNAILTIVHVLPHDSGVYTCRAWNTQGEASTSATVTTAGYEKILYDSQHPVSWERIQEL 2195
Query: 86 EGPPQEEKVIQIIE 99
E P E++ +I++
Sbjct: 2196 EAPKIVEEIEEIVQ 2209
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.138 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,197
Number of Sequences: 27539
Number of extensions: 323593
Number of successful extensions: 640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 36
length of query: 280
length of database: 12,573,161
effective HSP length: 80
effective length of query: 200
effective length of database: 10,370,041
effective search space: 2074008200
effective search space used: 2074008200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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