GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.99 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.2  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 127 AGDIIKTSCKLPRIPV------RANEG--DAYVLGALPIGTIVHCVEKEPGQGGLY-IHA 177
           AG+ ++  C +   P+      RAN    D      LP GT+V    ++ G  G+Y   A
Sbjct: 532 AGETLRLKCPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSA 591

Query: 178 AGTSGTIVRKQDDRVIVQMP 197
               G   R+  D  ++  P
Sbjct: 592 RNKQGHSARRSGDVAVIVPP 611



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 32  RRIVHFPEQYTVKPLEVT 49
           R +VH P ++ V+P +V+
Sbjct: 699 RLVVHVPPRWIVEPTDVS 716


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 25  PGFGKSYRRIVHFPEQYTVKPLEVTNLAGRDP 56
           P F KS +RI  + E Y  +   + N   + P
Sbjct: 130 PWFKKSVQRIKPYDEYYVWRDARIVNGTRQPP 161


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,838
Number of Sequences: 429
Number of extensions: 3709
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 280
length of database: 140,377
effective HSP length: 57
effective length of query: 223
effective length of database: 115,924
effective search space: 25851052
effective search space used: 25851052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)