GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001500-TA|BGIBMGA001500-PA|IPR002171|Ribosomal protein
L2, IPR008991|Translation protein SH3-like, IPR008994|Nucleic
acid-binding, OB-fold
         (280 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    73   2e-13
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    73   2e-13
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...    37   0.013
At4g28080.1 68417.m04027 expressed protein                             29   3.5  
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    28   8.0  
At1g54610.1 68414.m06228 protein kinase family protein contains ...    28   8.0  

>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 147 GDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRK-QDDRVIVQMPSKRLFSFN 205
           G +  LG + IGTI+H +E  PGQG   + AAGT+  I+++    + ++++PS      N
Sbjct: 60  GSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWIN 119

Query: 206 QLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPR 239
             C A +G +SN  HG+  +    ++RWLG RP+
Sbjct: 120 AKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPK 153


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 147 GDAYVLGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIVRK-QDDRVIVQMPSKRLFSFN 205
           G +  LG + IGTI+H +E  PGQG   + AAGT+  I+++    + ++++PS      N
Sbjct: 60  GSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWIN 119

Query: 206 QLCMAVVGRLSNVLHGSTPIGSPQRNRWLGNRPR 239
             C A +G +SN  HG+  +    ++RWLG RP+
Sbjct: 120 AKCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPK 153


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 94  VIQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPRIPVRAN--EGDAYV 151
           V +II D  R A +A VA     +Y+   E   A + + T   L     +AN   G+   
Sbjct: 46  VTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAEGMYTGQYL-YCGKKANLMVGNVLP 104

Query: 152 LGALPIGTIVHCVEKEPGQGGLYIHAAGTSGTIV--RKQDDRVIVQMPSKRLFSFNQLCM 209
           LG++P G ++  VE   G  G    A+G    ++    + +   V++PS         C 
Sbjct: 105 LGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACR 164

Query: 210 AVVGRLS 216
           A++G+++
Sbjct: 165 AMIGQVA 171


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 95  IQIIEDGCRTAHVALVAVGDQLKYILATENMKAGDIIKTSCKLPRIPVRANEGDAYVLGA 154
           + ++E+G + AHVAL  + + LK     + +   D I+T+     I +  +  DAY L  
Sbjct: 865 VAMMEEGMKNAHVALRYLHEALK---CNQRLLGADHIQTAASYHAIAIALSLMDAYSLSV 921

Query: 155 LPIGTIVHCVEKEPG 169
               T +  ++ + G
Sbjct: 922 QHEQTTLQILQAKLG 936


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 225 IGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTSTKLPP 273
           + S +  R  G+R  S   +R SG  GR+ +PP P      P    LPP
Sbjct: 510 LASSRSARGAGSRAPSSSAKRASGSRGRRPRPPLPPPARARP----LPP 554


>At1g54610.1 68414.m06228 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 572

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 218 VLHGSTPIGSPQRNRWLGNRPRSGLWQRKSGRHGRKIKPPKPVKQICNPTSTKLPP 273
           ++ G T +    +   L   P    W++    HG   KP +P K+    T    PP
Sbjct: 318 IMPGRTEVEQLHKIYKLCGSPSEDYWKKGKFTHGAIYKPREPYKRSIRETFKDFPP 373


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,270,054
Number of Sequences: 28952
Number of extensions: 314430
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 6
length of query: 280
length of database: 12,070,560
effective HSP length: 80
effective length of query: 200
effective length of database: 9,754,400
effective search space: 1950880000
effective search space used: 1950880000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)