SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001499-TA|BGIBMGA001499-PA|undefined
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi...    37   0.014
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof...    34   0.099
At1g08720.1 68414.m00968 mitogen-activated protein kinase kinase...    32   0.40 
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr...    32   0.53 
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam...    31   1.2  
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro...    31   1.2  
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr...    30   2.1  
At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont...    29   2.8  
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c...    29   2.8  
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom...    29   2.8  
At2g33360.1 68415.m04089 expressed protein                             29   2.8  
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat...    29   2.8  
At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam...    29   3.7  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    29   3.7  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   3.7  
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi...    29   4.9  
At2g38070.1 68415.m04673 expressed protein  and genscan                29   4.9  
At1g80260.1 68414.m09396 tubulin family protein                        29   4.9  
At3g13600.1 68416.m01712 calmodulin-binding family protein conta...    28   6.5  
At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-...    28   6.5  
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam...    28   6.5  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   6.5  
At5g65530.1 68418.m08245 protein kinase, putative contains prote...    28   8.6  
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    28   8.6  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    28   8.6  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    28   8.6  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    28   8.6  

>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
           protein RBP37, Arabidopsis thaliana, PIR:T04196
          Length = 353

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 168 ENEGILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNE-LT 226
           EN G+ +  S   L N NT++    +    C  +D+ SP  +SS  LT+    E+++ + 
Sbjct: 5   ENAGVKVDSSGQNLDNNNTAASATETTKPPCPDDDQ-SPKSDSSTPLTIDSTPETDDRIN 63

Query: 227 WACEDPQKMSQFS 239
              +  Q ++ FS
Sbjct: 64  ETAQKVQTLNGFS 76


>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 752

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 9/115 (7%)

Query: 132 ILESREYVSLLTAVRNSRFVALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDIN 191
           ILE+ E VS  TA+R      +++ E + +         G+   +      N N S +  
Sbjct: 629 ILENLEEVSRETAIRK-----VELKEAMTKVEKARDGKVGMDHELRKWRSDNGNRSPEGG 683

Query: 192 NSENASCSSNDRHSPSR----ESSPSLTVPENEESNELTWACEDPQKMSQFSLFP 242
           N EN S S +  H P+     E + S  V     S+ +T   E  +K  +FSL P
Sbjct: 684 NKENLSKSKSALHQPTTFTFGEQASSSNVTPQASSSNVTPETETKKKKKRFSLLP 738


>At1g08720.1 68414.m00968 mitogen-activated protein kinase kinase
           kinase (MAPKKK) (EDR1) identical to EDR1, a MAP kinase
           kinase kinase [Arabidopsis thaliana]
           gi|11127925|gb|AAG31143
          Length = 933

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 88  FNTIESVITDSEKSLLTPSTS---VSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTA 144
           F  + S+ TDS K    PS      ++G   +   +    +D++++ +LE  E ++L  +
Sbjct: 152 FYDVYSLSTDSAKQGEMPSLEDLESNHGTPGFEAVVVNRPIDSSLHELLEIAECIALGCS 211

Query: 145 VRNSRFVALDVAELVNESPGQNIENEGILMA 175
             +   +   +AELV E  G + E+  I++A
Sbjct: 212 TTSVSVLVQRLAELVTEHMGGSAEDSSIVLA 242


>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 760

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 85  NQDFNTIESVITDSEKSLLTPSTSV--SNGKLQYPRYMTKGFVDNTVNSILESREYVSLL 142
           +QDFN  ES       S LT  +S+   NG  +    ++      + +  LE  E +S  
Sbjct: 334 SQDFNRTESFRFSLRSSSLTSRSSLETGNGFEKLKINVSASLCGESQSKDLEIFELLSPG 393

Query: 143 TAVRNSRFVAL-DVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDINNSENASCSSN 201
            +  +SR  ++  V   V+  P    E E I        L N  +SS+++  +N   S+N
Sbjct: 394 QSYTHSRSESVCSVVSSVDYVPSVTHETESI--------LGNHQSSSEMSPKKNLESSNN 445

Query: 202 DRHSPSRESSPSLTVPENEESNELT 226
             H  S   +   +V + ++S  +T
Sbjct: 446 VNHEHSAAKTYECSVHDLDDSGTMT 470


>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 255

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 182 QNQNTSSDINNSENASCSSNDRHSPSRE--SSPSLTVPENEESNELTWACEDPQKMSQ 237
           Q ++ SS  NNS N S SS+ R S SR   S P     E EE   +    ED Q  +Q
Sbjct: 144 QGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQ 201


>At3g25500.1 68416.m03171 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 1051

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 180 GLQNQNTSSDINNSENASCSSNDRHSPSRES----SPSLTVPENEESNELTWACEDPQKM 235
           GL  QN  S +NN +  SCSS+   SP R +    SPS++ P+  E      +  +P ++
Sbjct: 270 GLPGQNPRS-VNN-DTISCSSSSSGSPGRSTFISISPSMS-PKRSEPKPPVISTPEPAEL 326

Query: 236 SQFSLFPDSSIS 247
           + +      S+S
Sbjct: 327 TDYRFVRSPSLS 338


>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 352

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 181 LQNQNTSSDINNSENASCSSND---RHSPSRESSPSLTVPENEESNELTWACEDPQKM 235
           +  QN+S+     E ++C+  D     S S+E  PS  +  N ++     A  DPQ +
Sbjct: 222 MSRQNSSTTFCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSL 279


>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 566

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 178 AHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNEL 225
           AH L ++ + S +++  N     +    P   SSPSL + + EE+ EL
Sbjct: 507 AHLLFHRPSDSSLSSDNNVLSYKSHPMIPQPNSSPSLRIEKQEETTEL 554


>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain; snoR29 gene for small
           nucleolar RNA GI:15706258
          Length = 917

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 185 NTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWACED 231
           +T SD +   ++S SS+D H+P    +P  T+PE+ E+ +   A  D
Sbjct: 557 STCSDPSGGPSSSKSSSD-HNPKDFQTPLQTIPEDTEAEDQDAALGD 602


>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 607

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 99  EKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDVAEL 158
           ++  +TPS+  +    +YP+  ++      +++  ES      LT ++N+R +   +AE+
Sbjct: 139 QRPQITPSSGQNGPSTRYPQN-SRNARQEAIDTSTESEFPTLSLTEIQNARGIMDVLAEM 197

Query: 159 VNESPGQNIE 168
           +N   G N E
Sbjct: 198 MNAIDGNNKE 207


>At2g33360.1 68415.m04089 expressed protein
          Length = 603

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 89  NTIESVITDSEKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESRE-YV-SLLTAVR 146
           N++ S  ++   S  +PS+SVS G LQ+   M      + V S+ + +E YV SL T   
Sbjct: 234 NSLSSSSSEQSSSSWSPSSSVSQGTLQFT--MKDNKTPHFVFSLDDQKEIYVASLSTTSV 291

Query: 147 NSRF--VALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSD 189
            S F   +LD + L++   G+  E + ++  +    L + +++++
Sbjct: 292 GSGFDRSSLDYSYLIHLKKGRGSEPQHLVGKLKVSTLFSVSSTNE 336


>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
           similar to IAA-alanine resistance protein 1 [Arabidopsis
           thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
           transporter domain, Pfam:PF02535; identical to cDNA
           IAA-alanine resistance protein 1 mRNA GI:6942042
          Length = 469

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 179 HGLQNQNTSSD--INNSENASCSSNDRHSPSRESSPSLTVPENEESNELT 226
           H   +Q +SSD  +N+SE  S  S D+    R++S S    +++   E+T
Sbjct: 254 HNNLDQQSSSDAIVNSSEKVSGGSTDKSLRKRKTSASDATDKSDSGTEIT 303


>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
           protein contains Pfam profile PF00145: C-5
           cytosine-specific DNA methylase
          Length = 383

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 171 GILMAISAHGLQNQNTSS-DINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWAC 229
           G+  ++ A G+ ++   + +IN+S N     N +H P + +  SLT  + ++ N   W  
Sbjct: 26  GMRYSLMASGIVSEVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAADLDKYNADAWLL 85

Query: 230 EDP 232
             P
Sbjct: 86  SPP 88


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 171 GILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTW--A 228
           G+  + S  G+    + SD ++S  +SCSS+D+ S +     + T   +   + L W   
Sbjct: 25  GLEDSSSPRGVLGMVSDSDNSSSSCSSCSSDDKSSSTSSPFSNTTKTVSSSHHGLQWNKM 84

Query: 229 CEDPQK--MSQFSLFP 242
            E  +K  M +FS+ P
Sbjct: 85  IESIKKKSMRRFSVIP 100


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 2   NITKASEESSCTGQENGDGSTDSER-PLKKARFAWQVKGKYHLKNENSDSSEE 53
           N   A+++SS + +++ +  +D E+ P KKA+ + +   +    +E+SD S++
Sbjct: 289 NAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDK 341


>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
           PF05285: SDA1
          Length = 698

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 182 QNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEE 221
           ++ N   D+NN+E+ +  S D      +S  + T  ENEE
Sbjct: 469 EDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEE 508


>At2g38070.1 68415.m04673 expressed protein  and genscan
          Length = 619

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 24  SERPLKKARFAWQVKGKYHLKNENSDSSEE 53
           +++  KK+R++W + G  H KN N    EE
Sbjct: 483 NKKRTKKSRWSWNIFGLLHRKNGNKYEEEE 512


>At1g80260.1 68414.m09396 tubulin family protein
          Length = 951

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 47  NSDSSEESTVPGPXXXXXXXXXDIETKQNLEILGDYFLNQDFNTIESVITDSEKSLLTPS 106
           N  S  E  V            D + +QN  +L   F+     +I S     +     PS
Sbjct: 272 NVTSLNEKKVMSGHDANSSLASDKDKEQNTRVLCPLFIKDICKSIVSAGKSLQLMQHIPS 331

Query: 107 TSVSN-GKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDVAELV 159
           TS  N GK Q+  +   G+  ++V S+L      S    +  S    L +A L+
Sbjct: 332 TSSENSGKTQF--HGRNGYGKSSVGSLLTKMSSCSSTADLSLSEVFCLTLAGLI 383


>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 605

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 96  TDSEKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDV 155
           T    S L    +V+ G+L     + K    ++ +       ++  L+ +R +    +D+
Sbjct: 311 TFQHSSFLAGGATVAAGRLVVENGVLKAVWPHSGHYQPTEENFMDFLSFLREND---VDI 367

Query: 156 AELVNESPGQNIENEGILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLT 215
            + V  SP    E   I    S H ++N +   D+   +  + S  D+  PS E     T
Sbjct: 368 TD-VKMSPTDEDEFS-IYKQRSTH-MRNHSLEEDLEAEK--TISFQDKVDPSGEEQ---T 419

Query: 216 VPENEESNELTWACEDPQKMSQFSLFPD 243
           +  NE  +      E P+KM  FS F D
Sbjct: 420 LMRNESISRKQSDLETPEKMESFSTFGD 447


>At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-2)
           similar to topoisomerase 6 subunit A (spo11)
           [Arabidopsis thaliana] GI:12331186; contains Pfam
           profile PF04406: Type IIB DNA topoisomerase; identical
           to cDNA putative topoisomerase VIA (SPO11 gene 2)
           GI:7270976
          Length = 383

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 135 SREYVSLLTAVR--NSRFVALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDINN 192
           +R  VS+L  +R  NS   A+    L+N     +  N+GIL  +S   L    T S + N
Sbjct: 31  ARIEVSVLNLLRILNSPDPAISDLSLINRKRSNSCINKGILTDVSYIFLSTSFTKSSLTN 90

Query: 193 SENA 196
           ++ A
Sbjct: 91  AKTA 94


>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 252

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 172 ILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEE 221
           I   ++ +  Q+++ S++ N+S + S     RHS S   +  ++ P  +E
Sbjct: 133 IFEVVTGNAKQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPRKE 182


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 187  SSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWACEDPQKMS 236
            SS I + + +SC S+  +SPS+ S  +L    +EE++    + E+  K S
Sbjct: 1444 SSCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEENSPKKSSEENSPKES 1493



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 165  QNIENE-GILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESN 223
            +N++ E   L++     L+  +  S + NS + S   N     S E+SP  +  EN  S 
Sbjct: 1433 ENVKREVSSLLSSCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEENSPKKSSEEN--SP 1490

Query: 224  ELTWACEDPQKMS 236
            + +   + PQK+S
Sbjct: 1491 KESSGDKSPQKLS 1503


>At5g65530.1 68418.m08245 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 456

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 187 SSDINNSENASCSSNDRHSPSRESSPSLTVPENEES-NELTWACEDPQKMS--QFSLFP 242
           SSD +NS  +SCSS    SP + SSP  T P N  S ++     E  +K S  +FS+ P
Sbjct: 40  SSDSDNS--SSCSSC---SPDKSSSPLSTTPPNVSSFHQWNKMIESIKKKSIRRFSVIP 93


>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 16  ENGDGSTDSERPLKKARFAWQVKG-KYHLKNENSDSSEESTVP 57
           ENG+GS DS  P  K  +A +  G +    ++    S+E TVP
Sbjct: 441 ENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVADSKEVTVP 483


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)

Query: 7   SEESSCTGQENGDGSTDSE 25
           SEESS TG ENG    DSE
Sbjct: 605 SEESSETGDENGSSDYDSE 623


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/19 (68%), Positives = 13/19 (68%)

Query: 7   SEESSCTGQENGDGSTDSE 25
           SEESS TG ENG    DSE
Sbjct: 605 SEESSETGDENGSSDYDSE 623


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 196 ASCSSNDRHSPSRESSPSLTVPENEESNELTWACEDPQKMSQFSLFPDSSIS 247
           A  SS+D  S S +SS S++   +  S+        P   S FS  PDSS S
Sbjct: 446 ADSSSSDSDSSSPDSSSSVSSSPDSSSS----VSSSPDSYSSFSSSPDSSSS 493


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.307    0.125    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,428,241
Number of Sequences: 28952
Number of extensions: 251081
Number of successful extensions: 812
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 30
length of query: 295
length of database: 12,070,560
effective HSP length: 81
effective length of query: 214
effective length of database: 9,725,448
effective search space: 2081245872
effective search space used: 2081245872
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 59 (27.9 bits)

- SilkBase 1999-2023 -