Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001499-TA|BGIBMGA001499-PA|undefined
(295 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 37 0.014
At1g45545.1 68414.m05199 hypothetical protein contains Pfam prof... 34 0.099
At1g08720.1 68414.m00968 mitogen-activated protein kinase kinase... 32 0.40
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 32 0.53
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 31 1.2
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 31 1.2
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr... 30 2.1
At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont... 29 2.8
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 29 2.8
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 29 2.8
At2g33360.1 68415.m04089 expressed protein 29 2.8
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat... 29 2.8
At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam... 29 3.7
At5g10520.1 68418.m01218 protein kinase family protein contains ... 29 3.7
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 3.7
At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profi... 29 4.9
At2g38070.1 68415.m04673 expressed protein and genscan 29 4.9
At1g80260.1 68414.m09396 tubulin family protein 29 4.9
At3g13600.1 68416.m01712 calmodulin-binding family protein conta... 28 6.5
At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-... 28 6.5
At1g14510.1 68414.m01720 PHD finger family protein contains Pfam... 28 6.5
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 6.5
At5g65530.1 68418.m08245 protein kinase, putative contains prote... 28 8.6
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 28 8.6
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ... 28 8.6
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ... 28 8.6
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 28 8.6
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 168 ENEGILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNE-LT 226
EN G+ + S L N NT++ + C +D+ SP +SS LT+ E+++ +
Sbjct: 5 ENAGVKVDSSGQNLDNNNTAASATETTKPPCPDDDQ-SPKSDSSTPLTIDSTPETDDRIN 63
Query: 227 WACEDPQKMSQFS 239
+ Q ++ FS
Sbjct: 64 ETAQKVQTLNGFS 76
>At1g45545.1 68414.m05199 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 752
Score = 34.3 bits (75), Expect = 0.099
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 132 ILESREYVSLLTAVRNSRFVALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDIN 191
ILE+ E VS TA+R +++ E + + G+ + N N S +
Sbjct: 629 ILENLEEVSRETAIRK-----VELKEAMTKVEKARDGKVGMDHELRKWRSDNGNRSPEGG 683
Query: 192 NSENASCSSNDRHSPSR----ESSPSLTVPENEESNELTWACEDPQKMSQFSLFP 242
N EN S S + H P+ E + S V S+ +T E +K +FSL P
Sbjct: 684 NKENLSKSKSALHQPTTFTFGEQASSSNVTPQASSSNVTPETETKKKKKRFSLLP 738
>At1g08720.1 68414.m00968 mitogen-activated protein kinase kinase
kinase (MAPKKK) (EDR1) identical to EDR1, a MAP kinase
kinase kinase [Arabidopsis thaliana]
gi|11127925|gb|AAG31143
Length = 933
Score = 32.3 bits (70), Expect = 0.40
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 88 FNTIESVITDSEKSLLTPSTS---VSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTA 144
F + S+ TDS K PS ++G + + +D++++ +LE E ++L +
Sbjct: 152 FYDVYSLSTDSAKQGEMPSLEDLESNHGTPGFEAVVVNRPIDSSLHELLEIAECIALGCS 211
Query: 145 VRNSRFVALDVAELVNESPGQNIENEGILMA 175
+ + +AELV E G + E+ I++A
Sbjct: 212 TTSVSVLVQRLAELVTEHMGGSAEDSSIVLA 242
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 31.9 bits (69), Expect = 0.53
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 85 NQDFNTIESVITDSEKSLLTPSTSV--SNGKLQYPRYMTKGFVDNTVNSILESREYVSLL 142
+QDFN ES S LT +S+ NG + ++ + + LE E +S
Sbjct: 334 SQDFNRTESFRFSLRSSSLTSRSSLETGNGFEKLKINVSASLCGESQSKDLEIFELLSPG 393
Query: 143 TAVRNSRFVAL-DVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDINNSENASCSSN 201
+ +SR ++ V V+ P E E I L N +SS+++ +N S+N
Sbjct: 394 QSYTHSRSESVCSVVSSVDYVPSVTHETESI--------LGNHQSSSEMSPKKNLESSNN 445
Query: 202 DRHSPSRESSPSLTVPENEESNELT 226
H S + +V + ++S +T
Sbjct: 446 VNHEHSAAKTYECSVHDLDDSGTMT 470
>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 255
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 182 QNQNTSSDINNSENASCSSNDRHSPSRE--SSPSLTVPENEESNELTWACEDPQKMSQ 237
Q ++ SS NNS N S SS+ R S SR S P E EE + ED Q +Q
Sbjct: 144 QGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQ 201
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 180 GLQNQNTSSDINNSENASCSSNDRHSPSRES----SPSLTVPENEESNELTWACEDPQKM 235
GL QN S +NN + SCSS+ SP R + SPS++ P+ E + +P ++
Sbjct: 270 GLPGQNPRS-VNN-DTISCSSSSSGSPGRSTFISISPSMS-PKRSEPKPPVISTPEPAEL 326
Query: 236 SQFSLFPDSSIS 247
+ + S+S
Sbjct: 327 TDYRFVRSPSLS 338
>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 352
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 181 LQNQNTSSDINNSENASCSSND---RHSPSRESSPSLTVPENEESNELTWACEDPQKM 235
+ QN+S+ E ++C+ D S S+E PS + N ++ A DPQ +
Sbjct: 222 MSRQNSSTTFCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSL 279
>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 566
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 178 AHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNEL 225
AH L ++ + S +++ N + P SSPSL + + EE+ EL
Sbjct: 507 AHLLFHRPSDSSLSSDNNVLSYKSHPMIPQPNSSPSLRIEKQEETTEL 554
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 185 NTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWACED 231
+T SD + ++S SS+D H+P +P T+PE+ E+ + A D
Sbjct: 557 STCSDPSGGPSSSKSSSD-HNPKDFQTPLQTIPEDTEAEDQDAALGD 602
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 99 EKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDVAEL 158
++ +TPS+ + +YP+ ++ +++ ES LT ++N+R + +AE+
Sbjct: 139 QRPQITPSSGQNGPSTRYPQN-SRNARQEAIDTSTESEFPTLSLTEIQNARGIMDVLAEM 197
Query: 159 VNESPGQNIE 168
+N G N E
Sbjct: 198 MNAIDGNNKE 207
>At2g33360.1 68415.m04089 expressed protein
Length = 603
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 89 NTIESVITDSEKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESRE-YV-SLLTAVR 146
N++ S ++ S +PS+SVS G LQ+ M + V S+ + +E YV SL T
Sbjct: 234 NSLSSSSSEQSSSSWSPSSSVSQGTLQFT--MKDNKTPHFVFSLDDQKEIYVASLSTTSV 291
Query: 147 NSRF--VALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSD 189
S F +LD + L++ G+ E + ++ + L + +++++
Sbjct: 292 GSGFDRSSLDYSYLIHLKKGRGSEPQHLVGKLKVSTLFSVSSTNE 336
>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
similar to IAA-alanine resistance protein 1 [Arabidopsis
thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
transporter domain, Pfam:PF02535; identical to cDNA
IAA-alanine resistance protein 1 mRNA GI:6942042
Length = 469
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 179 HGLQNQNTSSD--INNSENASCSSNDRHSPSRESSPSLTVPENEESNELT 226
H +Q +SSD +N+SE S S D+ R++S S +++ E+T
Sbjct: 254 HNNLDQQSSSDAIVNSSEKVSGGSTDKSLRKRKTSASDATDKSDSGTEIT 303
>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
protein contains Pfam profile PF00145: C-5
cytosine-specific DNA methylase
Length = 383
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 171 GILMAISAHGLQNQNTSS-DINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWAC 229
G+ ++ A G+ ++ + +IN+S N N +H P + + SLT + ++ N W
Sbjct: 26 GMRYSLMASGIVSEVVEAFEINDSANDVYQHNFKHRPYQGNIQSLTAADLDKYNADAWLL 85
Query: 230 EDP 232
P
Sbjct: 86 SPP 88
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 171 GILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTW--A 228
G+ + S G+ + SD ++S +SCSS+D+ S + + T + + L W
Sbjct: 25 GLEDSSSPRGVLGMVSDSDNSSSSCSSCSSDDKSSSTSSPFSNTTKTVSSSHHGLQWNKM 84
Query: 229 CEDPQK--MSQFSLFP 242
E +K M +FS+ P
Sbjct: 85 IESIKKKSMRRFSVIP 100
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2 NITKASEESSCTGQENGDGSTDSER-PLKKARFAWQVKGKYHLKNENSDSSEE 53
N A+++SS + +++ + +D E+ P KKA+ + + + +E+SD S++
Sbjct: 289 NAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDK 341
>At4g31520.1 68417.m04476 SDA1 family protein contains Pfam profile
PF05285: SDA1
Length = 698
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 182 QNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEE 221
++ N D+NN+E+ + S D +S + T ENEE
Sbjct: 469 EDSNDGDDMNNTEDDTLVSGDEEEEKNDSDEAETDWENEE 508
>At2g38070.1 68415.m04673 expressed protein and genscan
Length = 619
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 24 SERPLKKARFAWQVKGKYHLKNENSDSSEE 53
+++ KK+R++W + G H KN N EE
Sbjct: 483 NKKRTKKSRWSWNIFGLLHRKNGNKYEEEE 512
>At1g80260.1 68414.m09396 tubulin family protein
Length = 951
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 47 NSDSSEESTVPGPXXXXXXXXXDIETKQNLEILGDYFLNQDFNTIESVITDSEKSLLTPS 106
N S E V D + +QN +L F+ +I S + PS
Sbjct: 272 NVTSLNEKKVMSGHDANSSLASDKDKEQNTRVLCPLFIKDICKSIVSAGKSLQLMQHIPS 331
Query: 107 TSVSN-GKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDVAELV 159
TS N GK Q+ + G+ ++V S+L S + S L +A L+
Sbjct: 332 TSSENSGKTQF--HGRNGYGKSSVGSLLTKMSSCSSTADLSLSEVFCLTLAGLI 383
>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 605
Score = 28.3 bits (60), Expect = 6.5
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 96 TDSEKSLLTPSTSVSNGKLQYPRYMTKGFVDNTVNSILESREYVSLLTAVRNSRFVALDV 155
T S L +V+ G+L + K ++ + ++ L+ +R + +D+
Sbjct: 311 TFQHSSFLAGGATVAAGRLVVENGVLKAVWPHSGHYQPTEENFMDFLSFLREND---VDI 367
Query: 156 AELVNESPGQNIENEGILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLT 215
+ V SP E I S H ++N + D+ + + S D+ PS E T
Sbjct: 368 TD-VKMSPTDEDEFS-IYKQRSTH-MRNHSLEEDLEAEK--TISFQDKVDPSGEEQ---T 419
Query: 216 VPENEESNELTWACEDPQKMSQFSLFPD 243
+ NE + E P+KM FS F D
Sbjct: 420 LMRNESISRKQSDLETPEKMESFSTFGD 447
>At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-2)
similar to topoisomerase 6 subunit A (spo11)
[Arabidopsis thaliana] GI:12331186; contains Pfam
profile PF04406: Type IIB DNA topoisomerase; identical
to cDNA putative topoisomerase VIA (SPO11 gene 2)
GI:7270976
Length = 383
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 135 SREYVSLLTAVR--NSRFVALDVAELVNESPGQNIENEGILMAISAHGLQNQNTSSDINN 192
+R VS+L +R NS A+ L+N + N+GIL +S L T S + N
Sbjct: 31 ARIEVSVLNLLRILNSPDPAISDLSLINRKRSNSCINKGILTDVSYIFLSTSFTKSSLTN 90
Query: 193 SENA 196
++ A
Sbjct: 91 AKTA 94
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 252
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 172 ILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEE 221
I ++ + Q+++ S++ N+S + S RHS S + ++ P +E
Sbjct: 133 IFEVVTGNAKQSKDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPRKE 182
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 187 SSDINNSENASCSSNDRHSPSRESSPSLTVPENEESNELTWACEDPQKMS 236
SS I + + +SC S+ +SPS+ S +L +EE++ + E+ K S
Sbjct: 1444 SSCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEENSPKKSSEENSPKES 1493
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 165 QNIENE-GILMAISAHGLQNQNTSSDINNSENASCSSNDRHSPSRESSPSLTVPENEESN 223
+N++ E L++ L+ + S + NS + S N S E+SP + EN S
Sbjct: 1433 ENVKREVSSLLSSCIQSLKESSCDSSVVNSPSKSSEENLPAKSSEENSPKKSSEEN--SP 1490
Query: 224 ELTWACEDPQKMS 236
+ + + PQK+S
Sbjct: 1491 KESSGDKSPQKLS 1503
>At5g65530.1 68418.m08245 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 456
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 187 SSDINNSENASCSSNDRHSPSRESSPSLTVPENEES-NELTWACEDPQKMS--QFSLFP 242
SSD +NS +SCSS SP + SSP T P N S ++ E +K S +FS+ P
Sbjct: 40 SSDSDNS--SSCSSC---SPDKSSSPLSTTPPNVSSFHQWNKMIESIKKKSIRRFSVIP 93
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 16 ENGDGSTDSERPLKKARFAWQVKG-KYHLKNENSDSSEESTVP 57
ENG+GS DS P K +A + G + ++ S+E TVP
Sbjct: 441 ENGNGSPDSTTPSSKRVYARETSGSEGSSSSKKVADSKEVTVP 483
>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 7 SEESSCTGQENGDGSTDSE 25
SEESS TG ENG DSE
Sbjct: 605 SEESSETGDENGSSDYDSE 623
>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
complex beta3A subunit, Homo sapiens, SP|O00203;
contains Pfam profile: PF01602 Adaptin N terminal region
Length = 987
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 7 SEESSCTGQENGDGSTDSE 25
SEESS TG ENG DSE
Sbjct: 605 SEESSETGDENGSSDYDSE 623
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 196 ASCSSNDRHSPSRESSPSLTVPENEESNELTWACEDPQKMSQFSLFPDSSIS 247
A SS+D S S +SS S++ + S+ P S FS PDSS S
Sbjct: 446 ADSSSSDSDSSSPDSSSSVSSSPDSSSS----VSSSPDSYSSFSSSPDSSSS 493
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.307 0.125 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,428,241
Number of Sequences: 28952
Number of extensions: 251081
Number of successful extensions: 812
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 30
length of query: 295
length of database: 12,070,560
effective HSP length: 81
effective length of query: 214
effective length of database: 9,725,448
effective search space: 2081245872
effective search space used: 2081245872
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -