GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001498-TA|BGIBMGA001498-PA|IPR005988|Synaptic vesicle
protein SV2, IPR005829|Sugar transporter superfamily, IPR007114|Major
facilitator superfamily, IPR011701|Major facilitator superfamily MFS_1
         (556 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   3.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   3.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   4.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   9.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 178 PVIWSYFAEFQPKKKRGAMLSFMAA 202
           P ++SYFA   P+K+R    +F  A
Sbjct: 113 PQVYSYFAGVNPRKQRRERTTFTRA 137


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 263 LISTGRHEDALEVFRSIYLMNTGRSKD 289
           L+S   HEDA E F     +NTG+  +
Sbjct: 284 LLSDWMHEDATERFPGRLAVNTGQDPE 310


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 263 LISTGRHEDALEVFRSIYLMNTGRSKD 289
           L+S   HEDA E F     +NTG+  +
Sbjct: 284 LLSDWMHEDATERFPGRLAVNTGQDPE 310


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 176 SGPVIWSYFAEFQPKK 191
           +G V+W  F +FQP +
Sbjct: 281 NGKVVWEGFGDFQPSQ 296


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 501 AVSMVAARLGG-IIGNVVIAALLDTY 525
           + S+ AA  GG ++G+V I+A+LD++
Sbjct: 23  SASVDAATGGGSVLGDVNISAILDSF 48


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,106
Number of Sequences: 317
Number of extensions: 5051
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 556
length of database: 114,650
effective HSP length: 60
effective length of query: 496
effective length of database: 95,630
effective search space: 47432480
effective search space used: 47432480
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)