GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001498-TA|BGIBMGA001498-PA|IPR005988|Synaptic vesicle
protein SV2, IPR005829|Sugar transporter superfamily, IPR007114|Major
facilitator superfamily, IPR011701|Major facilitator superfamily MFS_1
         (556 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    26   2.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   9.3  

>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
          protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 36 PSVKKSKSDPEKGSNSEKADFERAIELTGYGRF-HYMLLAVCGLVSTSEEMDVISMSF 92
          PS  + K  P    N        AIEL   GRF H  ++ +       E++  I  +F
Sbjct: 35 PSASQPKQKPAPAFNPRAGRMPNAIELESIGRFKHAEMMPILRETVKKEDVQRIRTNF 92


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 284 TGRSKDEYPVKQILVDDLVHAKPEKQ 309
           +G+S   Y ++ +L D+  H +PE++
Sbjct: 36  SGKSNFFYAIQFVLSDEFTHLRPEQR 61


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,872
Number of Sequences: 2123
Number of extensions: 20742
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 556
length of database: 516,269
effective HSP length: 67
effective length of query: 489
effective length of database: 374,028
effective search space: 182899692
effective search space used: 182899692
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)