Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001497-TA|BGIBMGA001497-PA|IPR001214|SET, IPR001965|Zinc
finger, PHD-type, IPR001025|Bromo adjacent region, IPR011011|Zinc
finger, FYVE/PHD-type, IPR006560|AWS, IPR001487|Bromodomain,
IPR003616|Post-SET zinc-binding region
         (2917 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     26   3.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    26   4.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    26   4.4  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 2617 RDIPIDDKHPDVSQKNGLDKNESPKTKRVDRKKLKHPVKGKEKLDESAQDKESEVRKHTY 2676
            R +P+D K  D+S +NG   + SP    ++  K      G  + D++  D E +  K   
Sbjct: 189  RPLPLDQKARDLSPRNGSPTDHSPV---LNLSKSGGGSAGSLEDDDNISDPEDDDDKDQD 245

Query: 2677 QTIGAVPV 2684
               G +P+
Sbjct: 246  MDEGDLPL 253


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 117 QINNLPEIPPIAPNFLSTSQHLSPQQNEELNQI 149
           Q+    ++PP+ PNF +   H+ P+ N   N +
Sbjct: 686 QVGTHADLPPVPPNFPTCGDHV-PEINSNPNLV 717


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthologue
            protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/47 (21%), Positives = 25/47 (53%)

Query: 1197 KKLGDDKLSSVKENKETNENSKDEVKDPEKQENVQMETDKQVSNNVD 1243
            K+  D+K   +++  ++  +S D     EK+ ++Q   D   ++++D
Sbjct: 234  KRFKDEKKELIRQTHKSPSHSVDNSNSSEKKSSIQHGDDAHKTHHLD 280


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,234
Number of Sequences: 317
Number of extensions: 26659
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 3
length of query: 2917
length of database: 114,650
effective HSP length: 69
effective length of query: 2848
effective length of database: 92,777
effective search space: 264228896
effective search space used: 264228896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)