Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    33   0.16 
At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR) domai...    31   0.64 
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   3.4  
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa...    27   5.9  
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa...    27   5.9  
At5g27640.1 68418.m03311 eukaryotic translation initiation facto...    27   7.9  

>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1
          family protein similar to PHO1 protein [Arabidopsis
          thaliana] GI:20069032; contains Pfam profiles PF03105:
          SPX domain, PF03124: EXS family
          Length = 784

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 4/34 (11%)

Query: 19 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 52
          VKF ++F+G ++ +W    K+ F+DY Q+ +DL+
Sbjct: 2  VKFTKQFEGQLVPEW----KDAFVDYSQLKKDLK 31


>At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 241

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 38  KNLFIDYRQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKIINNEVG 97
           KNL  ++    ++LR    +DP+K +KW   + +  ++ R   T  D    L ++   V 
Sbjct: 111 KNLEDEFGNHFEELREKYANDPLKILKWEDSLSS--IVERTGLTSEDHGTGLGLVRAIVT 168

Query: 98  LVSEECLN 105
            V  E ++
Sbjct: 169 AVKSELMD 176


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 76  SRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLR 113
           SR NP   DF+  L+ +NN V  +S + +N  +VEH++
Sbjct: 409 SRCNPGSNDFEYRLESVNN-VHRLSNQDVNNASVEHVK 445


>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 18  KVKFPEKFKGTIIEKWADYW 37
           K+K    F  T +EKW DYW
Sbjct: 118 KLKCGHLFHKTCLEKWIDYW 137


>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 18  KVKFPEKFKGTIIEKWADYW 37
           K+K    F  T +EKW DYW
Sbjct: 118 KLKCGHLFHKTCLEKWIDYW 137


>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
           subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
           to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
           subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
           thaliana}
          Length = 712

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)

Query: 31  EKWADYWKNLFIDYRQMLQDLR----SDIQDDPMKA 62
           EKW   WK+L  + + + Q+LR    SD+++D  +A
Sbjct: 658 EKWVMQWKSLHEEEKLVRQNLRDGEVSDVEEDEYEA 693


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,693,980
Number of Sequences: 28952
Number of extensions: 191510
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 6
length of query: 188
length of database: 12,070,560
effective HSP length: 77
effective length of query: 111
effective length of database: 9,841,256
effective search space: 1092379416
effective search space used: 1092379416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)