GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
         (188 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   2.7  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 156 PTYFSFPSRIVDIGFMGKWWNLFIKSTNY 184
           PT +  P  ++ I  +G WW  F+  T+Y
Sbjct: 8   PTLYLIPVSVILIS-VG-WWENFVSETSY 34


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 156 PTYFSFPSRIVDIGFMGKWWNLFIKSTNY 184
           PT +  P  ++ I  +G WW  F+  T+Y
Sbjct: 241 PTLYLIPVSVILIS-VG-WWENFVSETSY 267


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 156 PTYFSFPSRIVDIGFMGKWWNLFIKSTNY 184
           PT +  P  ++ I  +G WW  F+  T+Y
Sbjct: 241 PTLYLIPVSVILIS-VG-WWENFVSETSY 267


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/48 (18%), Positives = 23/48 (47%)

Query: 72  FYLLSRNNPTECDFKDNLKIINNEVGLVSEECLNPKAVEHLRFLDTCY 119
           FYL+S+     C+ K+ +   N+  G+     ++   +  + ++D  +
Sbjct: 176 FYLVSKIESLACELKNTVDDFNDIFGISFLLIISYSTLHFVNYIDDLF 223


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,900
Number of Sequences: 317
Number of extensions: 2089
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 114,650
effective HSP length: 53
effective length of query: 135
effective length of database: 97,849
effective search space: 13209615
effective search space used: 13209615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)