Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001496-TA|BGIBMGA001496-PA|undefined
(188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 28 0.99
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 28 0.99
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.7
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 27 2.3
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 26 3.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 5.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.2
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 25 9.2
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 9.2
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 27.9 bits (59), Expect = 0.99
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 6 YKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFID 43
YK++ + N + P KF IE W+ K+LF+D
Sbjct: 470 YKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.9 bits (59), Expect = 0.99
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 110 EHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAH-CTYTKPTY 158
EH+ FLDTC + ++ + +L V S+L N+C ++ ++ T+T+ Y
Sbjct: 680 EHIDFLDTCLKECML--TNSRLLKVQ--SKLLNTCAMFASYTSTFTRSLY 725
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 29 IIEKWADYWKNLFIDYRQMLQDL 51
+I+ W W NLFI Y ++ DL
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDL 1440
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 65 WTTGIITFYLLSRNNPTECD 84
W+ G+I F LLS N+P+ D
Sbjct: 354 WSLGVIMFLLLSGNSPSFAD 373
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 26 KGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMKAMK 64
K IEK + ++N F +Y+Q+++ L +D P K K
Sbjct: 334 KSERIEKIHNAYENQFDEYKQIVKKLPKLKEDSPRKRQK 372
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 22 PEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDD 58
P++F IIE++ + +F D + ++RS +Q D
Sbjct: 426 PKRFAKAIIEEFRNGHSVVFADRNNHISNMRSTLQTD 462
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 35 DYWKNLFIDYRQMLQDLRSDIQDDPMKAMKW 65
DYWK+L+I + L +S + +K +KW
Sbjct: 561 DYWKSLYILLNENLFVGQSSFKSVFLKWLKW 591
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 9.2
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 65 WTTGIITFYLLSRNNPTECDFKDNLKIINNEVGLVSE--------ECLNP---KAVEHLR 113
W+ ++ N E K N KI N E+ L S + +N ++ L+
Sbjct: 230 WSPSEYEDVMVKSNKVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDESRRSTAELQ 289
Query: 114 FLDTCYNQEVIHYRSLGILSVMYTSELS 141
++ T Y + ++ Y + L + YT+ LS
Sbjct: 290 YITTLYERAIVLYPLIPELWLQYTAWLS 317
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 159 FSFPSRIVDIGFMGKWWN 176
F+ ++ D GF G WWN
Sbjct: 407 FAEITKFADRGFYGAWWN 424
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 50 DLRSDIQDDPMKAMKWTTGIITFYLLSRNNPT-ECDFKDNLKIINNEVGLVSEECLNPKA 108
DL + D WT+G LSR+ PT K +L ++ + LV+EE +
Sbjct: 57 DLSCVVTDSEAIKKFWTSGFFGKGNLSRSEPTWHTRTKRSLGLLGFDEDLVAEEVTARRR 116
Query: 109 VEHLRF 114
+ +F
Sbjct: 117 FQRKQF 122
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,983
Number of Sequences: 5004
Number of extensions: 40100
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 2,362,478
effective HSP length: 69
effective length of query: 119
effective length of database: 2,017,202
effective search space: 240047038
effective search space used: 240047038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
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